Domain ID e4fbyD1

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  • A: alpha bundles
  • X: Bacterial photosystem II reaction centre L and M subunits-like
  • H: Bacterial photosystem II reaction centre L and M subunits-like
  • T: Bacterial photosystem II reaction centre L and M subunits-like
  • F: Photo_RC
UID: 000150862
Type: Automatic domain
Parent: e2j8cL1
Range: D:1-352
Ligands: BCR BCT CL CLA DGD FE2 LHG LMG LMT PHO PL9 SQD
PDB: 4fby
PDB Description: Photosystem II D2 protein
UniProt: Q8CM25
Species:

Structure of domain e4fbyD1

Domains in the same chain:

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e4fbyD1 D:1-352 Bacterial photosystem II reaction centre L and M subunits-like Bacterial photosystem II reaction centre L and M subunits-like Bacterial photosystem II reaction centre L and M subunits-like

Domains in the same PDB:

e4fbya1 a:1-35 Photosystem II reaction center protein I, PsbI Photosystem II reaction center protein I, PsbI Photosystem II reaction center protein I, PsbI
e4fbyA1 A:1-344 Bacterial photosystem II reaction centre L and M subunits-like Bacterial photosystem II reaction centre L and M subunits-like Bacterial photosystem II reaction centre L and M subunits-like
e4fbyb1 b:2-35 Photosystem II reaction center protein J, PsbJ Photosystem II reaction center protein J, PsbJ Photosystem II reaction center protein J, PsbJ
e4fbyB1 B:2-328,B:445-491 Photosystem II antenna protein-like Photosystem II antenna protein-like Photosystem II antenna protein-like
e4fbyB2 B:329-444 Photosystem II antenna protein PsbB insertion domain Photosystem II antenna protein PsbB insertion domain Photosystem II antenna protein PsbB insertion domain
e4fbyc1 c:10-46 Photosystem II reaction center protein K, PsbK Photosystem II reaction center protein K, PsbK Photosystem II reaction center protein K, PsbK
e4fbyC1 C:27-473 Photosystem II antenna protein-like Photosystem II antenna protein-like Photosystem II antenna protein-like
e4fbyd1 d:1-37 Photosystem II reaction center protein L, PsbL Photosystem II reaction center protein L, PsbL Photosystem II reaction center protein L, PsbL
e4fbyD1 D:1-352 Bacterial photosystem II reaction centre L and M subunits-like Bacterial photosystem II reaction centre L and M subunits-like Bacterial photosystem II reaction centre L and M subunits-like
e4fbye1 e:1-34 Photosystem II reaction center protein M, PsbM Photosystem II reaction center protein M, PsbM Photosystem II reaction center protein M, PsbM
e4fbyE1 E:2-84 Cytochrome b559 subunits Cytochrome b559 subunits Cytochrome b559 subunits
e4fbyf1 f:27-269 Outer membrane meander beta-barrels OMPA-like OMPA-like
e4fbyF1 F:11-45 Cytochrome b559 subunits Cytochrome b559 subunits Cytochrome b559 subunits
e4fbyG2 G:10-344 Bacterial photosystem II reaction centre L and M subunits-like Bacterial photosystem II reaction centre L and M subunits-like Bacterial photosystem II reaction centre L and M subunits-like
e4fbyh1 h:31-127 HhH/H2TH SAM/DNA-glycosylase SAM domain-like
e4fbyH1 H:2-66 Photosystem II 10 kDa phosphoprotein PsbH Photosystem II 10 kDa phosphoprotein PsbH Photosystem II 10 kDa phosphoprotein PsbH
e4fbyi1 i:27-163 Cytochrome c-like Cytochrome c Cytochrome c
e4fbyI1 I:1-35 Photosystem II reaction center protein I, PsbI Photosystem II reaction center protein I, PsbI Photosystem II reaction center protein I, PsbI
e4fbyj1 j:11-47 Photosystem II PsbX protein Photosystem II PsbX protein Photosystem II PsbX protein
e4fbyJ1 J:7-40 Photosystem II reaction center protein J, PsbJ Photosystem II reaction center protein J, PsbJ Photosystem II reaction center protein J, PsbJ
e4fbyK1 K:10-46 Photosystem II reaction center protein K, PsbK Photosystem II reaction center protein K, PsbK Photosystem II reaction center protein K, PsbK
e4fbyl1 l:1-62 PsbZ-like PsbZ-like PsbZ-like
e4fbyL1 L:1-37 Photosystem II reaction center protein L, PsbL Photosystem II reaction center protein L, PsbL Photosystem II reaction center protein L, PsbL
e4fbym1 m:19-46 Photosystem II reaction center protein ycf12 Photosystem II reaction center protein ycf12 Photosystem II reaction center protein ycf12
e4fbyM1 M:1-36 Photosystem II reaction center protein M, PsbM Photosystem II reaction center protein M, PsbM Photosystem II reaction center protein M, PsbM
e4fbyN1 N:2-328,N:445-491 Photosystem II antenna protein-like Photosystem II antenna protein-like Photosystem II antenna protein-like
e4fbyN2 N:329-444 Photosystem II antenna protein PsbB insertion domain Photosystem II antenna protein PsbB insertion domain Photosystem II antenna protein PsbB insertion domain
e4fbyO1 O:27-272 Outer membrane meander beta-barrels OMPA-like OMPA-like
e4fbyP1 P:27-473 Photosystem II antenna protein-like Photosystem II antenna protein-like Photosystem II antenna protein-like
e4fbyQ2 Q:13-352 Bacterial photosystem II reaction centre L and M subunits-like Bacterial photosystem II reaction centre L and M subunits-like Bacterial photosystem II reaction centre L and M subunits-like
e4fbyR1 R:2-83 Cytochrome b559 subunits Cytochrome b559 subunits Cytochrome b559 subunits
e4fbyS1 S:2-36 Cytochrome b559 subunits Cytochrome b559 subunits Cytochrome b559 subunits
e4fbyU1 U:31-134 HhH/H2TH SAM/DNA-glycosylase SAM domain-like
e4fbyV1 V:27-163 Cytochrome c-like Cytochrome c Cytochrome c
e4fbyW1 W:2-66 Photosystem II 10 kDa phosphoprotein PsbH Photosystem II 10 kDa phosphoprotein PsbH Photosystem II 10 kDa phosphoprotein PsbH
e4fbyX1 X:11-47 Photosystem II PsbX protein Photosystem II PsbX protein Photosystem II PsbX protein
e4fbyy1 y:19-46 Photosystem II reaction center protein ycf12 Photosystem II reaction center protein ycf12 Photosystem II reaction center protein ycf12
e4fbyZ1 Z:1-62 PsbZ-like PsbZ-like PsbZ-like

Structural contacts of domain e4fbyD1 of H-group "Bacterial photosystem II reaction centre L and M subunits-like":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e4fbyA1 D:x,y,z->A:X,Y,Z Bacterial photosystem II reaction centre L and M subunits-like Interaction Interface Pymol
e4fbyB1 D:x,y,z->B:X,Y,Z Photosystem II antenna protein-like Interaction Interface Pymol
e4fbyB2 D:x,y,z->B:X,Y,Z Photosystem II antenna protein PsbB insertion domain Interaction Interface Pymol
e4fbyE1 D:X,Y,Z->E:x,y,z Cytochrome b559 subunits Interaction Interface Pymol
e4fbyC1 D:x,y,z->C:X,Y,Z Photosystem II antenna protein-like Interaction Interface Pymol
e4fbyO1 D:X,Y,Z->O:x,y,z OMPA-like Interaction Interface Pymol
e4fbyX1 D:X,Y,Z->X:x,y,z Photosystem II PsbX protein Interaction Interface Pymol
e4fbyF1 D:X,Y,Z->F:x,y,z Cytochrome b559 subunits Interaction Interface Pymol
e4fbyL1 D:X,Y,Z->L:x,y,z Photosystem II reaction center protein L, PsbL Interaction Interface Pymol
e4fbyH1 D:X,Y,Z->H:x,y,z Photosystem II 10 kDa phosphoprotein PsbH Interaction Interface Pymol
e4fbyV1 D:X,Y,Z->V:x,y,z Cytochrome c Interaction Interface Pymol
e4fbyM1 D:X,Y,Z->M:x,y,z Photosystem II reaction center protein M, PsbM Interaction Interface Pymol
e4fbyU1 D:X,Y,Z->U:x,y,z SAM/DNA-glycosylase Interaction Interface Pymol
e4fbyJ1 D:X,Y,Z->J:x,y,z Photosystem II reaction center protein J, PsbJ Interaction Interface Pymol