Domain ID e4flwA5

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  • A: beta barrels
  • X: OB-fold
  • H: Nucleic acid-binding proteins
  • T: Nucleic acid-binding proteins
  • F: Unmapped domains
UID: 001619011
Type: Automatic domain
Parent: e1tgoA1
Range: A:-2-34,A:115-133
Ligands: MES
PDB: 4flw
PDB Description: DNA polymerase 1
UniProt: P0CL77
Species:

Structure of domain e4flwA5

Domains in the same chain:

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e4flwA5 A:-2-34,A:115-133 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e4flwA4 A:35-114 Alpha-beta plaits Family B DNA polymerase insertion domain Family B DNA polymerase insertion domain
e4flwA1 A:134-347 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e4flwA3 A:348-448,A:503-610 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like
e4flwA2 A:449-502 "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I
e4flwA6 A:611-757 "thumb" domain in bacteriophage RB69-like DNA polymerase I "thumb" domain in bacteriophage RB69-like DNA polymerase I "thumb" domain in bacteriophage RB69-like DNA polymerase I

Domains in the same PDB:

e4flwA5 A:-2-34,A:115-133 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e4flwA4 A:35-114 Alpha-beta plaits Family B DNA polymerase insertion domain Family B DNA polymerase insertion domain
e4flwA1 A:134-347 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e4flwA3 A:348-448,A:503-610 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like
e4flwA2 A:449-502 "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I
e4flwA6 A:611-757 "thumb" domain in bacteriophage RB69-like DNA polymerase I "thumb" domain in bacteriophage RB69-like DNA polymerase I "thumb" domain in bacteriophage RB69-like DNA polymerase I

Structural contacts of domain e4flwA5 of H-group "Nucleic acid-binding proteins":

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The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e4flwA6 A:x,y,z->A:X-1/2,-Y-1/2,-Z "thumb" domain in bacteriophage RB69-like DNA polymerase I Interaction Interface Pymol