Domain ID e4fm0A2

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  • A: a+b two layers
  • X: Alpha-beta plaits
  • H: Adenylyl and guanylyl cyclase catalytic domain-like
  • T: Adenylyl and guanylyl cyclase catalytic domain-like
  • F: DNA_pol_B
UID: 001651441
Type: Automatic domain
Parent: e1tgoA4
Range: A:348-448,A:503-610
Ligands: GOL
PDB: 4fm0
PDB Description: DNA polymerase 1
UniProt: P0CL77
Species:

Structure of domain e4fm0A2

Domains in the same chain:

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e4fm0A3 A:-1-34,A:115-133 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e4fm0A6 A:35-114 Alpha-beta plaits Family B DNA polymerase insertion domain Family B DNA polymerase insertion domain
e4fm0A4 A:134-347 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e4fm0A2 A:348-448,A:503-610 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like
e4fm0A5 A:449-502 "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I
e4fm0A1 A:611-757 "thumb" domain in bacteriophage RB69-like DNA polymerase I "thumb" domain in bacteriophage RB69-like DNA polymerase I "thumb" domain in bacteriophage RB69-like DNA polymerase I

Domains in the same PDB:

e4fm0A3 A:-1-34,A:115-133 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e4fm0A6 A:35-114 Alpha-beta plaits Family B DNA polymerase insertion domain Family B DNA polymerase insertion domain
e4fm0A4 A:134-347 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e4fm0A2 A:348-448,A:503-610 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like
e4fm0A5 A:449-502 "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I
e4fm0A1 A:611-757 "thumb" domain in bacteriophage RB69-like DNA polymerase I "thumb" domain in bacteriophage RB69-like DNA polymerase I "thumb" domain in bacteriophage RB69-like DNA polymerase I

Structural contacts of domain e4fm0A2 of H-group "Adenylyl and guanylyl cyclase catalytic domain-like":

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The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e4fm0A2 A:x,y,z->A:-X+1,Y-1/2,-Z-1/2 Adenylyl and guanylyl cyclase catalytic domain-like Interaction Interface Pymol
e4fm0A1 A:x,y,z->A:-X+1,Y-1/2,-Z-1/2 "thumb" domain in bacteriophage RB69-like DNA polymerase I Interaction Interface Pymol
e4fm0A2 A:-X+1,Y-1/2,-Z-1/2->A:x,y,z Adenylyl and guanylyl cyclase catalytic domain-like Interaction Interface Pymol
e4fm0A4 A:X-1,Y,Z->A:x,y,z Ribonuclease H-like Interaction Interface Pymol