Domain ID e4fm1A3

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  • A: a+b two layers
  • X: Alpha-beta plaits
  • H: Family B DNA polymerase insertion domain
  • T: Family B DNA polymerase insertion domain
  • F: Unmapped domains
UID: 001662915
Type: Automatic domain
Parent: e1tgoA5
Range: A:35-114
Ligands: GOL
PDB: 4fm1
PDB Description: DNA polymerase 1
UniProt: P0CL77
Species:

Structure of domain e4fm1A3

Domains in the same chain:

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e4fm1A6 A:-1-34,A:115-133 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e4fm1A3 A:35-114 Alpha-beta plaits Family B DNA polymerase insertion domain Family B DNA polymerase insertion domain
e4fm1A5 A:134-347 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e4fm1A1 A:348-448,A:503-610 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like
e4fm1A4 A:449-502 "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I
e4fm1A2 A:611-757 "thumb" domain in bacteriophage RB69-like DNA polymerase I "thumb" domain in bacteriophage RB69-like DNA polymerase I "thumb" domain in bacteriophage RB69-like DNA polymerase I

Domains in the same PDB:

e4fm1A6 A:-1-34,A:115-133 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e4fm1A3 A:35-114 Alpha-beta plaits Family B DNA polymerase insertion domain Family B DNA polymerase insertion domain
e4fm1A5 A:134-347 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e4fm1A1 A:348-448,A:503-610 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like
e4fm1A4 A:449-502 "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I
e4fm1A2 A:611-757 "thumb" domain in bacteriophage RB69-like DNA polymerase I "thumb" domain in bacteriophage RB69-like DNA polymerase I "thumb" domain in bacteriophage RB69-like DNA polymerase I

Structural contacts of domain e4fm1A3 of H-group "Family B DNA polymerase insertion domain":

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The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e4fm1A2 A:x,y,z->A:X-1/2,-Y-1/2,-Z "thumb" domain in bacteriophage RB69-like DNA polymerase I Interaction Interface Pymol
e4fm1A5 A:X-1/2,-Y-1/2,-Z->A:x,y,z Ribonuclease H-like Interaction Interface Pymol
e4fm1A2 A:X-1/2,-Y-1/2,-Z->A:x,y,z "thumb" domain in bacteriophage RB69-like DNA polymerase I Interaction Interface Pymol
e4fm1A4 A:-X+1/2,-Y-1,Z-1/2->A:x,y,z "fingers" domain in bacteriophage RB69-like DNA polymerase I Interaction Interface Pymol