Domain ID e4fm2A6

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  • A: a+b two layers
  • X: Alpha-beta plaits
  • H: Adenylyl and guanylyl cyclase catalytic domain-like
  • T: Adenylyl and guanylyl cyclase catalytic domain-like
  • F: DNA_pol_B
UID: 001604380
Type: Automatic domain
Parent: e1tgoA4
Range: A:348-448,A:503-610
Ligands: GOL
PDB: 4fm2
PDB Description: DNA polymerase 1
UniProt: P0CL77
Species:

Structure of domain e4fm2A6

Domains in the same chain:

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e4fm2A2 A:-1-34,A:115-133 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e4fm2A1 A:35-114 Alpha-beta plaits Family B DNA polymerase insertion domain Family B DNA polymerase insertion domain
e4fm2A5 A:134-347 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e4fm2A6 A:348-448,A:503-610 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like
e4fm2A4 A:449-502 "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I
e4fm2A3 A:611-757 "thumb" domain in bacteriophage RB69-like DNA polymerase I "thumb" domain in bacteriophage RB69-like DNA polymerase I "thumb" domain in bacteriophage RB69-like DNA polymerase I

Domains in the same PDB:

e4fm2A2 A:-1-34,A:115-133 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e4fm2A1 A:35-114 Alpha-beta plaits Family B DNA polymerase insertion domain Family B DNA polymerase insertion domain
e4fm2A5 A:134-347 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e4fm2A6 A:348-448,A:503-610 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like
e4fm2A4 A:449-502 "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I
e4fm2A3 A:611-757 "thumb" domain in bacteriophage RB69-like DNA polymerase I "thumb" domain in bacteriophage RB69-like DNA polymerase I "thumb" domain in bacteriophage RB69-like DNA polymerase I

Structural contacts of domain e4fm2A6 of H-group "Adenylyl and guanylyl cyclase catalytic domain-like":

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The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e4fm2A3 A:X-1/2,-Y-1/2,-Z->A:x,y,z "thumb" domain in bacteriophage RB69-like DNA polymerase I Interaction Interface Pymol
e4fm2A6 A:x,y,z->A:-X+1,Y-1/2,-Z-1/2 Adenylyl and guanylyl cyclase catalytic domain-like Interaction Interface Pymol
e4fm2A3 A:x,y,z->A:-X+1,Y-1/2,-Z-1/2 "thumb" domain in bacteriophage RB69-like DNA polymerase I Interaction Interface Pymol
e4fm2A6 A:-X+1,Y-1/2,-Z-1/2->A:x,y,z Adenylyl and guanylyl cyclase catalytic domain-like Interaction Interface Pymol
e4fm2A5 A:X-1,Y,Z->A:x,y,z Ribonuclease H-like Interaction Interface Pymol