Domain ID e4fydB1

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  • A: alpha bundles
  • X: "fingers" domain in bacteriophage RB69-like DNA polymerase I
  • H: "fingers" domain in bacteriophage RB69-like DNA polymerase I
  • T: "fingers" domain in bacteriophage RB69-like DNA polymerase I
  • F: DNA_pol_B
UID: 001504875
Type: Automatic domain
Parent: e4q5vA3
Range: B:904-958
Ligands: DGT
PDB: 4fyd
PDB Description: DNA POLYMERASE ALPHA CATALYTIC SUBUNIT A
UniProt: P13382
Hsap BLAST neighbor: P09884
Species:

Structure of domain e4fydB1

Domains in the same chain:

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e4fydB4 B:349-389,B:480-531 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e4fydB2 B:390-479 Alpha-beta plaits Family B DNA polymerase insertion domain Family B DNA polymerase insertion domain
e4fydB6 B:532-815 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e4fydB5 B:841-903,B:959-1072 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like
e4fydB1 B:904-958 "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I
e4fydB3 B:1073-1242 "thumb" domain in bacteriophage RB69-like DNA polymerase I "thumb" domain in bacteriophage RB69-like DNA polymerase I "thumb" domain in bacteriophage RB69-like DNA polymerase I

Domains in the same PDB:

e4fydA3 A:349-389,A:480-531 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e4fydA5 A:390-479 Alpha-beta plaits Family B DNA polymerase insertion domain Family B DNA polymerase insertion domain
e4fydA1 A:532-815 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e4fydA2 A:841-903,A:959-1072 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like
e4fydA4 A:904-958 "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I
e4fydA6 A:1073-1242 "thumb" domain in bacteriophage RB69-like DNA polymerase I "thumb" domain in bacteriophage RB69-like DNA polymerase I "thumb" domain in bacteriophage RB69-like DNA polymerase I
e4fydB4 B:349-389,B:480-531 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e4fydB2 B:390-479 Alpha-beta plaits Family B DNA polymerase insertion domain Family B DNA polymerase insertion domain
e4fydB6 B:532-815 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e4fydB5 B:841-903,B:959-1072 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like
e4fydB1 B:904-958 "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I
e4fydB3 B:1073-1242 "thumb" domain in bacteriophage RB69-like DNA polymerase I "thumb" domain in bacteriophage RB69-like DNA polymerase I "thumb" domain in bacteriophage RB69-like DNA polymerase I