Domain ID e4gd3J3

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  • A: a+b two layers
  • X: FAD-linked reductases, C-terminal domain-like
  • H: Ni-Fe binding domain in nickel-iron hydrogenase large subunit
  • T: Ni-Fe binding domain in nickel-iron hydrogenase large subunit
  • F: NiFeSe_Hases
UID: 001772507
Type: Automatic domain
Parent: e1ublL5
Range: J:2-54,J:542-582
Ligands: FCO MG NI
PDB: 4gd3
PDB Description: HYDROGENASE-1 LARGE CHAIN
UniProt: P0ACD8
Species:

Structure of domain e4gd3J3

Domains in the same chain:

Download Pymol

e4gd3J3 J:2-54,J:542-582 FAD-linked reductases, C-terminal domain-like Ni-Fe binding domain in nickel-iron hydrogenase large subunit Ni-Fe binding domain in nickel-iron hydrogenase large subunit
e4gd3J1 J:55-97,J:490-541 FAD-linked reductases, C-terminal domain-like Ni-Fe binding domain in nickel-iron hydrogenase large subunit Ni-Fe binding domain in nickel-iron hydrogenase large subunit
e4gd3J2 J:98-337,J:407-489 alpha-helical domain in nickel-iron hydrogenase, large subunit alpha-helical domain in nickel-iron hydrogenase, large subunit alpha-helical domain in nickel-iron hydrogenase, large subunit
e4gd3J4 J:338-406 all-beta domain in nickel-iron hydrogenase large subunit all-beta domain in nickel-iron hydrogenase large subunit all-beta domain in nickel-iron hydrogenase large subunit

Domains in the same PDB:

e4gd3A1 A:8-210 Transmembrane heme-binding four-helical bundle Transmembrane heme-binding four-helical bundle Transmembrane di-heme cytochromes
e4gd3B2 B:8-210 Transmembrane heme-binding four-helical bundle Transmembrane heme-binding four-helical bundle Transmembrane di-heme cytochromes
e4gd3J3 J:2-54,J:542-582 FAD-linked reductases, C-terminal domain-like Ni-Fe binding domain in nickel-iron hydrogenase large subunit Ni-Fe binding domain in nickel-iron hydrogenase large subunit
e4gd3J1 J:55-97,J:490-541 FAD-linked reductases, C-terminal domain-like Ni-Fe binding domain in nickel-iron hydrogenase large subunit Ni-Fe binding domain in nickel-iron hydrogenase large subunit
e4gd3J2 J:98-337,J:407-489 alpha-helical domain in nickel-iron hydrogenase, large subunit alpha-helical domain in nickel-iron hydrogenase, large subunit alpha-helical domain in nickel-iron hydrogenase, large subunit
e4gd3J4 J:338-406 all-beta domain in nickel-iron hydrogenase large subunit all-beta domain in nickel-iron hydrogenase large subunit all-beta domain in nickel-iron hydrogenase large subunit
e4gd3K2 K:2-54,K:542-582 FAD-linked reductases, C-terminal domain-like Ni-Fe binding domain in nickel-iron hydrogenase large subunit Ni-Fe binding domain in nickel-iron hydrogenase large subunit
e4gd3K4 K:55-97,K:490-541 FAD-linked reductases, C-terminal domain-like Ni-Fe binding domain in nickel-iron hydrogenase large subunit Ni-Fe binding domain in nickel-iron hydrogenase large subunit
e4gd3K3 K:98-337,K:407-489 alpha-helical domain in nickel-iron hydrogenase, large subunit alpha-helical domain in nickel-iron hydrogenase, large subunit alpha-helical domain in nickel-iron hydrogenase, large subunit
e4gd3K1 K:338-406 all-beta domain in nickel-iron hydrogenase large subunit all-beta domain in nickel-iron hydrogenase large subunit all-beta domain in nickel-iron hydrogenase large subunit
e4gd3L3 L:2-54,L:542-582 FAD-linked reductases, C-terminal domain-like Ni-Fe binding domain in nickel-iron hydrogenase large subunit Ni-Fe binding domain in nickel-iron hydrogenase large subunit
e4gd3L2 L:55-97,L:490-541 FAD-linked reductases, C-terminal domain-like Ni-Fe binding domain in nickel-iron hydrogenase large subunit Ni-Fe binding domain in nickel-iron hydrogenase large subunit
e4gd3L4 L:98-337,L:407-489 alpha-helical domain in nickel-iron hydrogenase, large subunit alpha-helical domain in nickel-iron hydrogenase, large subunit alpha-helical domain in nickel-iron hydrogenase, large subunit
e4gd3L1 L:338-406 all-beta domain in nickel-iron hydrogenase large subunit all-beta domain in nickel-iron hydrogenase large subunit all-beta domain in nickel-iron hydrogenase large subunit
e4gd3M2 M:2-54,M:542-582 FAD-linked reductases, C-terminal domain-like Ni-Fe binding domain in nickel-iron hydrogenase large subunit Ni-Fe binding domain in nickel-iron hydrogenase large subunit
e4gd3M4 M:55-97,M:490-541 FAD-linked reductases, C-terminal domain-like Ni-Fe binding domain in nickel-iron hydrogenase large subunit Ni-Fe binding domain in nickel-iron hydrogenase large subunit
e4gd3M3 M:98-337,M:407-489 alpha-helical domain in nickel-iron hydrogenase, large subunit alpha-helical domain in nickel-iron hydrogenase, large subunit alpha-helical domain in nickel-iron hydrogenase, large subunit
e4gd3M1 M:338-406 all-beta domain in nickel-iron hydrogenase large subunit all-beta domain in nickel-iron hydrogenase large subunit all-beta domain in nickel-iron hydrogenase large subunit
e4gd3Q2 Q:1-177 Flavodoxin-like Class I glutamine amidotransferase-like CheY-like
e4gd3Q1 Q:178-262 Fe-S cluster-binding domain in nickel-iron hydrogenase small subunit Fe-S cluster-binding domain in nickel-iron hydrogenase small subunit Fe-S cluster-binding domain in nickel-iron hydrogenase small subunit
e4gd3Q3 Q:273-307 Transmembrane helix of nickel-iron hydrogenase small subunit Transmembrane helix of nickel-iron hydrogenase small subunit Transmembrane helix of nickel-iron hydrogenase small subunit
e4gd3R2 R:1-177 Flavodoxin-like Class I glutamine amidotransferase-like CheY-like
e4gd3R1 R:178-262 Fe-S cluster-binding domain in nickel-iron hydrogenase small subunit Fe-S cluster-binding domain in nickel-iron hydrogenase small subunit Fe-S cluster-binding domain in nickel-iron hydrogenase small subunit
e4gd3R3 R:273-303 Transmembrane helix of nickel-iron hydrogenase small subunit Transmembrane helix of nickel-iron hydrogenase small subunit Transmembrane helix of nickel-iron hydrogenase small subunit
e4gd3S2 S:4-183 Flavodoxin-like Class I glutamine amidotransferase-like CheY-like
e4gd3S3 S:184-274 Fe-S cluster-binding domain in nickel-iron hydrogenase small subunit Fe-S cluster-binding domain in nickel-iron hydrogenase small subunit Fe-S cluster-binding domain in nickel-iron hydrogenase small subunit
e4gd3S1 S:273-307 Transmembrane helix of nickel-iron hydrogenase small subunit Transmembrane helix of nickel-iron hydrogenase small subunit Transmembrane helix of nickel-iron hydrogenase small subunit
e4gd3T2 T:1-177 Flavodoxin-like Class I glutamine amidotransferase-like CheY-like
e4gd3T1 T:178-262 Fe-S cluster-binding domain in nickel-iron hydrogenase small subunit Fe-S cluster-binding domain in nickel-iron hydrogenase small subunit Fe-S cluster-binding domain in nickel-iron hydrogenase small subunit
e4gd3T3 T:273-303 Transmembrane helix of nickel-iron hydrogenase small subunit Transmembrane helix of nickel-iron hydrogenase small subunit Transmembrane helix of nickel-iron hydrogenase small subunit

Structural contacts of domain e4gd3J3 of H-group "Ni-Fe binding domain in nickel-iron hydrogenase large subunit":

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The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e4gd3B2 J:-X+1/2,-Y,Z-1/2->B:x,y,z Transmembrane heme-binding four-helical bundle Interaction Interface Pymol