Domain ID e4gdfB1

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  • A: a+b two layers
  • X: Alpha-beta plaits
  • H: Origin of replication-binding domains
  • T: Origin of replication-binding domains
  • F: T_Ag_DNA_bind
UID: 000985926
Type: Automatic domain
Parent: e2fufA1
Range: B:131-262
PDB: 4gdf
PDB Description: Large T antigen
UniProt: P03070
Species: Simian virus 40

Structure of domain e4gdfB1

Domains in the same chain:

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e4gdfB1 B:131-262 Alpha-beta plaits Origin of replication-binding domains Origin of replication-binding domains
e4gdfB3 B:264-355 N-terminal domain of large tumor antigen N-terminal domain of large tumor antigen N-terminal domain of large tumor antigen
e4gdfB4 B:356-421,B:546-627 PriB N-terminal domain-like PriB N-terminal domain-like PriB N-terminal domain-like
e4gdfB2 B:417-547 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases

Domains in the same PDB:

e4gdfA2 A:131-262 Alpha-beta plaits Origin of replication-binding domains Origin of replication-binding domains
e4gdfA4 A:265-355 N-terminal domain of large tumor antigen N-terminal domain of large tumor antigen N-terminal domain of large tumor antigen
e4gdfA5 A:356-421,A:546-627 PriB N-terminal domain-like PriB N-terminal domain-like PriB N-terminal domain-like
e4gdfA3 A:417-547 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e4gdfB1 B:131-262 Alpha-beta plaits Origin of replication-binding domains Origin of replication-binding domains
e4gdfB3 B:264-355 N-terminal domain of large tumor antigen N-terminal domain of large tumor antigen N-terminal domain of large tumor antigen
e4gdfB4 B:356-421,B:546-627 PriB N-terminal domain-like PriB N-terminal domain-like PriB N-terminal domain-like
e4gdfB2 B:417-547 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e4gdfE1 E:131-262 Alpha-beta plaits Origin of replication-binding domains Origin of replication-binding domains
e4gdfE3 E:265-355 N-terminal domain of large tumor antigen N-terminal domain of large tumor antigen N-terminal domain of large tumor antigen
e4gdfE4 E:356-421,E:546-627 PriB N-terminal domain-like PriB N-terminal domain-like PriB N-terminal domain-like
e4gdfE2 E:417-547 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e4gdfF1 F:131-262 Alpha-beta plaits Origin of replication-binding domains Origin of replication-binding domains
e4gdfF3 F:264-355 N-terminal domain of large tumor antigen N-terminal domain of large tumor antigen N-terminal domain of large tumor antigen
e4gdfF4 F:356-421,F:546-627 PriB N-terminal domain-like PriB N-terminal domain-like PriB N-terminal domain-like
e4gdfF2 F:417-547 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases

Structural contacts of domain e4gdfB1 of H-group "Origin of replication-binding domains":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e2fufA1 B:-X-1,Y-1/2,-Z->A:x,y,z Origin of replication-binding domains Interaction Interface Pymol