| UID: | 000222955 |
|---|---|
| Type: | Automatic domain |
| Parent: | e1e43A2 |
| Range: | A:1-337 |
| PDB: | 4gkl |
| PDB Description: | Alpha-amylase |
| UniProt: | B5ARZ9 |
| Hsap BLAST neighbor: | Q04446 |
| Species: | Thermotoga neapolitana |
Structure of domain e4gklA1
Domains in the same chain:
| e4gklA1 | A:1-337 | TIM beta/alpha-barrel | TIM barrels | TIM barrels |
| e4gklA2 | A:338-422 | Glycosyl hydrolase domain-like | Glycosyl hydrolase domain | Glycosyl hydrolase domain |
Domains in the same PDB:
Structural contacts of domain e4gklA1 of H-group "TIM barrels":
The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.
| Domain ID | Symmetry operator | H-group | Visualization |
|---|---|---|---|
| e4gklA1 | A:x,y,z->A:-X,Y-1/2,-Z+2 | TIM barrels | Interaction Interface Pymol |
| e4gklA1 | A:-X,Y-1/2,-Z+2->A:x,y,z | TIM barrels | Interaction Interface Pymol |
| e4gklA2 | A:-X,Y-1/2,-Z+2->A:x,y,z | Glycosyl hydrolase domain | Interaction Interface Pymol |
| e4gklB2 | A:-X+1,Y-1/2,-Z+1->B:x,y,z | TIM barrels | Interaction Interface Pymol |
| e4gklB3 | A:-X,Y-1/2,-Z+1->B:x,y,z | Glycosyl hydrolase domain | Interaction Interface Pymol |
| e4gklB2 | A:-X,Y-1/2,-Z+1->B:x,y,z | TIM barrels | Interaction Interface Pymol |
| e4gklB2 | A:x,y,z->B:X-1,Y+1,Z | TIM barrels | Interaction Interface Pymol |
| e4gklB3 | A:X,Y-1,Z->B:x,y,z | Glycosyl hydrolase domain | Interaction Interface Pymol |
| e4gklB2 | A:-X+1,Y-3/2,-Z+1->B:x,y,z | TIM barrels | Interaction Interface Pymol |
