Domain ID e4gmsC1

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  • A: beta sandwiches
  • X: jelly-roll
  • H: Viral protein domain
  • T: Viral protein domain
  • F: Hemagglutinin
UID: 000968386
Type: Automatic domain
Parent: e1jsdA1
Range: C:10-319
Ligands: GOL NAG PG4 SO4
PDB: 4gms
PDB Description: Hemagglutinin HA1 chain
UniProt: P03435
Species:

Structure of domain e4gmsC1

Domains in the same chain:

e4gmsC1 C:10-319 jelly-roll Viral protein domain Viral protein domain

Domains in the same PDB:

e4gmsA1 A:10-325 jelly-roll Viral protein domain Viral protein domain
e4gmsC1 C:10-319 jelly-roll Viral protein domain Viral protein domain
e4gmsE1 E:10-319 jelly-roll Viral protein domain Viral protein domain
e4gmsH10 H:1-113 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e4gmsH9 H:114-213 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e4gmsI4 I:1-113 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e4gmsI3 I:114-205 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e4gmsJ6 J:1-113 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e4gmsJ5 J:114-213 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e4gmsL1 L:1-107 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e4gmsL2 L:108-213 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e4gmsM2 M:1-108 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e4gmsM3 M:109-180 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e4gmsN1 N:1-105 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e4gmsN2 N:106-212 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like

Structural contacts of domain e4gmsC1 of H-group "Viral protein domain":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e4gmsI4 C:X,Y,Z->I:x,y,z Immunoglobulin-related Interaction Interface Pymol
e4gmsA1 C:x,y,z->A:X,Y,Z Viral protein domain Interaction Interface Pymol
e4gmsE1 C:X,Y,Z->E:x,y,z Viral protein domain Interaction Interface Pymol
e4gmsE1 C:x,y,z->E:-X+1/2,Y-1/2,-Z Viral protein domain Interaction Interface Pymol