ECOD: domain e4grlA2

Domain ID e4grlA2

A: a+b two layers
X: MHC antigen-recognition domain
H: MHC antigen-recognition domain
T: MHC antigen-recognition domain
F: MHC_II_alpha

UID:	001109043
Type:	Automatic domain
Parent:	e1hdmA2
Range:	A:-1-81
PDB:	4grl
PDB Description:	MHC CLASS II HLA-DQ-ALPHA CHAIN
UniProt:	Q30066
Hsap BLAST neighbor:	P01906
Species:	Homo sapiens

Domains in the same chain:

Download Pymol

e4grlA2	A:-1-81	MHC antigen-recognition domain	MHC antigen-recognition domain	MHC antigen-recognition domain
e4grlA1	A:82-180	Immunoglobulin-like beta-sandwich	Immunoglobulin-related	Immunoglobulin/Fibronectin type III/E set domains/PapD-like

Domains in the same PDB:

e4grlA2	A:-1-81	MHC antigen-recognition domain	MHC antigen-recognition domain	MHC antigen-recognition domain
e4grlA1	A:82-180	Immunoglobulin-like beta-sandwich	Immunoglobulin-related	Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e4grlB2	B:3-93	MHC antigen-recognition domain	MHC antigen-recognition domain	MHC antigen-recognition domain
e4grlB1	B:95-191	Immunoglobulin-like beta-sandwich	Immunoglobulin-related	Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e4grlC1	C:2-112	Immunoglobulin-like beta-sandwich	Immunoglobulin-related	Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e4grlC2	C:113-192	Immunoglobulin-like beta-sandwich	Immunoglobulin-related	Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e4grlD3	D:28-140	Immunoglobulin-like beta-sandwich	Immunoglobulin-related	Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e4grlD1	D:141-267	Immunoglobulin-like beta-sandwich	Immunoglobulin-related	Immunoglobulin/Fibronectin type III/E set domains/PapD-like

Structural contacts of domain e4grlA2 of H-group "MHC antigen-recognition domain":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain ID	Symmetry operator	H-group	Visualization
e1hdmA2	A:X,Y,Z->B:x,y,z	MHC antigen-recognition domain	Interaction Interface Pymol
e4grlB1	A:X,Y,Z->B:x,y,z	Immunoglobulin-related	Interaction Interface Pymol
e4grlD3	A:X,Y,Z->D:x,y,z	Immunoglobulin-related	Interaction Interface Pymol
e4grlC2	A:x,y,z->C:-X,Y-1/2,-Z+1/2	Immunoglobulin-related	Interaction Interface Pymol
e4grlC1	A:X,Y,Z->C:x,y,z	Immunoglobulin-related	Interaction Interface Pymol