ECOD: domain e4gz9A3

Domain ID e4gz9A3

A: beta sandwiches
X: jelly-roll
H: Spermadhesin, CUB domain
T: Spermadhesin, CUB domain
F: CUB

UID:	000153237
Type:	Automatic domain
Parent:	e1sfpA1
Range:	A:142-266
Ligands:	CA EDO NAG SO4
PDB:	4gz9
PDB Description:	NEUROPILIN-1
UniProt:	P97333
Hsap BLAST neighbor:	O14786
Species:	Mus musculus

Domain
In chain context
In PDB context

Structure of domain e4gz9A3

Domains in the same chain:

Download Pymol

e4gz9A4	A:25-141	jelly-roll	Spermadhesin, CUB domain	Spermadhesin, CUB domain
e4gz9A3	A:142-266	jelly-roll	Spermadhesin, CUB domain	Spermadhesin, CUB domain
e4gz9A2	A:267-429	jelly-roll	Galactose-binding domain-like	Galactose-binding domain-like
e4gz9A1	A:430-586	jelly-roll	Galactose-binding domain-like	Galactose-binding domain-like

Domains in the same PDB:

e4gz9A4	A:25-141	jelly-roll	Spermadhesin, CUB domain	Spermadhesin, CUB domain
e4gz9A3	A:142-266	jelly-roll	Spermadhesin, CUB domain	Spermadhesin, CUB domain
e4gz9A2	A:267-429	jelly-roll	Galactose-binding domain-like	Galactose-binding domain-like
e4gz9A1	A:430-586	jelly-roll	Galactose-binding domain-like	Galactose-binding domain-like

Structural contacts of domain e4gz9A3 of H-group "Spermadhesin, CUB domain":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain ID	Symmetry operator	H-group	Visualization
e4gz9A4	A:x,y,z->A:-X,-X+Y,-Z+1	Spermadhesin, CUB domain	Interaction Interface Pymol
e4gz9A4	A:-X,-X+Y,-Z+1->A:x,y,z	Spermadhesin, CUB domain	Interaction Interface Pymol