ECOD: domain e4i1dB2

Domain ID e4i1dB2

A: a/b three-layered sandwiches
X: Periplasmic binding protein-like II
H: Periplasmic binding protein-like II
T: Periplasmic binding protein-like II
F: SBP_bac_8

UID:	001881616
Type:	Automatic domain
Parent:	e5l9pB2
Range:	B:138-270
Ligands:	ACT GOL MLT SO4
PDB:	4i1d
PDB Description:	ABC TRANSPORTER SUBSTRATE-BINDING PROTEIN
UniProt:	Q89F76
Species:

Domain
In chain context
In PDB context

Structure of domain e4i1dB2

Domains in the same chain:

Download Pymol

e4i1dB3	B:42-144,B:270-363	Periplasmic binding protein-like II	Periplasmic binding protein-like II	Periplasmic binding protein-like II
e4i1dB2	B:138-270	Periplasmic binding protein-like II	Periplasmic binding protein-like II	Periplasmic binding protein-like II

Domains in the same PDB:

e4i1dA1	A:42-144,A:270-363	Periplasmic binding protein-like II	Periplasmic binding protein-like II	Periplasmic binding protein-like II
e4i1dA2	A:145-269	Periplasmic binding protein-like II	Periplasmic binding protein-like II	Periplasmic binding protein-like II
e4i1dB3	B:42-144,B:270-363	Periplasmic binding protein-like II	Periplasmic binding protein-like II	Periplasmic binding protein-like II
e4i1dB2	B:138-270	Periplasmic binding protein-like II	Periplasmic binding protein-like II	Periplasmic binding protein-like II
e4i1dC1	C:43-144,C:270-364	Periplasmic binding protein-like II	Periplasmic binding protein-like II	Periplasmic binding protein-like II
e4i1dC2	C:145-269	Periplasmic binding protein-like II	Periplasmic binding protein-like II	Periplasmic binding protein-like II
e4i1dD1	D:42-144,D:270-363	Periplasmic binding protein-like II	Periplasmic binding protein-like II	Periplasmic binding protein-like II
e4i1dD2	D:138-270	Periplasmic binding protein-like II	Periplasmic binding protein-like II	Periplasmic binding protein-like II

Structural contacts of domain e4i1dB2 of H-group "Periplasmic binding protein-like II":

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The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain ID	Symmetry operator	H-group	Visualization
e4i1dD1	B:X,Y,Z->D:x,y,z	Periplasmic binding protein-like II	Interaction Interface Pymol
e4i1dD1	B:X-Y+1,-Y+2,-Z+1/3->D:x,y,z	Periplasmic binding protein-like II	Interaction Interface Pymol
e4i1dD2	B:X-Y+1,-Y+2,-Z+1/3->D:x,y,z	Periplasmic binding protein-like II	Interaction Interface Pymol
e4i1dC2	B:X,Y,Z->C:x,y,z	Periplasmic binding protein-like II	Interaction Interface Pymol