Domain ID e4i2qA6

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  • A: alpha bundles
  • X: helical bundle domain in reverse transcriptase-like polymerases
  • H: helical bundle domain in reverse transcriptase-like polymerases
  • T: helical bundle domain in reverse transcriptase-like polymerases
  • F: RVT_thumb
UID: 001186508
Type: Automatic domain
Parent: e2zd1B1
Range: A:240-316
PDB: 4i2q
PDB Description: Gag-Pol polyprotein
UniProt: P03366
Species:

Structure of domain e4i2qA6

Domains in the same chain:

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e4i2qA7 A:-1-239 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like
e4i2qA6 A:240-316 helical bundle domain in reverse transcriptase-like polymerases helical bundle domain in reverse transcriptase-like polymerases helical bundle domain in reverse transcriptase-like polymerases
e4i2qA5 A:317-428 Ribonuclease H-like RNaseH-like domain in reverse transcriptase RNaseH-like domain in reverse transcriptase
e4i2qA3 A:429-554 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like

Domains in the same PDB:

e4i2qA7 A:-1-239 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like
e4i2qA6 A:240-316 helical bundle domain in reverse transcriptase-like polymerases helical bundle domain in reverse transcriptase-like polymerases helical bundle domain in reverse transcriptase-like polymerases
e4i2qA5 A:317-428 Ribonuclease H-like RNaseH-like domain in reverse transcriptase RNaseH-like domain in reverse transcriptase
e4i2qA3 A:429-554 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e4i2qB6 B:5-230 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like
e4i2qB4 B:231-304 helical bundle domain in reverse transcriptase-like polymerases helical bundle domain in reverse transcriptase-like polymerases helical bundle domain in reverse transcriptase-like polymerases
e4i2qB5 B:305-428 Ribonuclease H-like RNaseH-like domain in reverse transcriptase RNaseH-like domain in reverse transcriptase

Structural contacts of domain e4i2qA6 of H-group "helical bundle domain in reverse transcriptase-like polymerases":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e4i2qB5 A:x,y,z->B:X,Y-1,Z RNaseH-like domain in reverse transcriptase Interaction Interface Pymol
e4i2qA7 A:x,y,z->A:-X+1/2,Y-1/2,-Z+1 Adenylyl and guanylyl cyclase catalytic domain-like Interaction Interface Pymol