ECOD: domain e4i43B2

Domain ID e4i43B2

A: alpha bundles
X: helical bundle domain in reverse transcriptase-like polymerases
H: helical bundle domain in reverse transcriptase-like polymerases
T: helical bundle domain in reverse transcriptase-like polymerases
F: U6-snRNA_bdg,U5_2-snRNA_bdg

UID:	001115250
Type:	Automatic domain
Parent:	e3zefE2
Range:	B:1256-1575
PDB:	4i43
PDB Description:	Pre-mRNA-splicing factor 8
UniProt:	P33334
Hsap BLAST neighbor:	Q6P2Q9
Species:

Domains in the same chain:

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Domains in the same PDB:

e4i43A1	A:2-157	Immunoglobulin-like beta-sandwich	N-terminal domain in A1 cistron-splicing factor AAR2	N-terminal domain in A1 cistron-splicing factor AAR2
e4i43A2	A:165-355	Repetitive alpha hairpins	ARM repeat	ARM repeat
e4i43B1	B:882-1255	Alpha-beta plaits	Adenylyl and guanylyl cyclase catalytic domain-like	Adenylyl and guanylyl cyclase catalytic domain-like
e4i43B2	B:1256-1575	helical bundle domain in reverse transcriptase-like polymerases	helical bundle domain in reverse transcriptase-like polymerases	helical bundle domain in reverse transcriptase-like polymerases
e4i43B5	B:1598-1831	Restriction endonuclease-like	Restriction endonuclease-like	Restriction endonuclease-like
e4i43B4	B:1831-2078	Ribonuclease H-like	Ribonuclease H-like	Ribonuclease H-like
e4i43B3	B:2147-2396	Cytidine deaminase-like	Cytidine deaminase-like	Cytidine deaminase-like

Structural contacts of domain e4i43B2 of H-group "helical bundle domain in reverse transcriptase-like polymerases":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain ID	Symmetry operator	H-group	Visualization
e4i43A2	B:x,y,z->A:X,Y,Z	ARM repeat	Interaction Interface Pymol
e4i43B3	B:x,y,z->B:-X+1,Y,-Z+1/2	Cytidine deaminase-like	Interaction Interface Pymol
e4i43B5	B:x,y,z->B:-X+1,Y,-Z+1/2	Restriction endonuclease-like	Interaction Interface Pymol
e4i43B2	B:x,y,z->B:-X+1,Y,-Z+1/2	helical bundle domain in reverse transcriptase-like polymerases	Interaction Interface Pymol
e4i43B2	B:-X+1,Y,-Z+1/2->B:x,y,z	helical bundle domain in reverse transcriptase-like polymerases	Interaction Interface Pymol
e4i43B5	B:-X+1,Y,-Z+1/2->B:x,y,z	Restriction endonuclease-like	Interaction Interface Pymol
e4i43B3	B:-X+1,Y,-Z+1/2->B:x,y,z	Cytidine deaminase-like	Interaction Interface Pymol