Domain ID e4i43B2

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  • A: alpha bundles
  • X: helical bundle domain in reverse transcriptase-like polymerases
  • H: helical bundle domain in reverse transcriptase-like polymerases
  • T: helical bundle domain in reverse transcriptase-like polymerases
  • F: U6-snRNA_bdg,U5_2-snRNA_bdg
UID: 001115250
Type: Automatic domain
Parent: e3zefE2
Range: B:1256-1575
PDB: 4i43
PDB Description: Pre-mRNA-splicing factor 8
UniProt: P33334
Hsap BLAST neighbor: Q6P2Q9
Species:

Structure of domain e4i43B2

Domains in the same chain:

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e4i43B1 B:882-1255 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like
e4i43B2 B:1256-1575 helical bundle domain in reverse transcriptase-like polymerases helical bundle domain in reverse transcriptase-like polymerases helical bundle domain in reverse transcriptase-like polymerases
e4i43B5 B:1598-1831 Restriction endonuclease-like Restriction endonuclease-like Restriction endonuclease-like
e4i43B4 B:1831-2078 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e4i43B3 B:2147-2396 Cytidine deaminase-like Cytidine deaminase-like Cytidine deaminase-like

Domains in the same PDB:

e4i43A1 A:2-157 Immunoglobulin-like beta-sandwich N-terminal domain in A1 cistron-splicing factor AAR2 N-terminal domain in A1 cistron-splicing factor AAR2
e4i43A2 A:165-355 Repetitive alpha hairpins ARM repeat ARM repeat
e4i43B1 B:882-1255 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like
e4i43B2 B:1256-1575 helical bundle domain in reverse transcriptase-like polymerases helical bundle domain in reverse transcriptase-like polymerases helical bundle domain in reverse transcriptase-like polymerases
e4i43B5 B:1598-1831 Restriction endonuclease-like Restriction endonuclease-like Restriction endonuclease-like
e4i43B4 B:1831-2078 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e4i43B3 B:2147-2396 Cytidine deaminase-like Cytidine deaminase-like Cytidine deaminase-like

Structural contacts of domain e4i43B2 of H-group "helical bundle domain in reverse transcriptase-like polymerases":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e4i43A2 B:x,y,z->A:X,Y,Z ARM repeat Interaction Interface Pymol
e4i43B3 B:x,y,z->B:-X+1,Y,-Z+1/2 Cytidine deaminase-like Interaction Interface Pymol
e4i43B5 B:x,y,z->B:-X+1,Y,-Z+1/2 Restriction endonuclease-like Interaction Interface Pymol
e4i43B2 B:x,y,z->B:-X+1,Y,-Z+1/2 helical bundle domain in reverse transcriptase-like polymerases Interaction Interface Pymol
e4i43B2 B:-X+1,Y,-Z+1/2->B:x,y,z helical bundle domain in reverse transcriptase-like polymerases Interaction Interface Pymol
e4i43B5 B:-X+1,Y,-Z+1/2->B:x,y,z Restriction endonuclease-like Interaction Interface Pymol
e4i43B3 B:-X+1,Y,-Z+1/2->B:x,y,z Cytidine deaminase-like Interaction Interface Pymol