Domain ID e4i8cB2

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  • A: a/b three-layered sandwiches
  • X: Periplasmic binding protein-like II
  • H: Periplasmic binding protein-like II
  • T: Periplasmic binding protein-like II
  • F: SBP_bac_5
UID: 001520972
Type: Automatic domain
Parent: e1zlqA3
Range: B:246-470
Ligands: ACT CL GOL HIS NI SO4
PDB: 4i8c
PDB Description: NICKEL-BINDING PERIPLASMIC PROTEIN
UniProt: P33590
Species:

Structure of domain e4i8cB2

Domains in the same chain:

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e4i8cB3 B:3-19,B:141-245,B:471-501 Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II
e4i8cB1 B:20-140 Alpha-beta plaits Oligo-peptide binding protein (OPPA) insertion domain Oligo-peptide binding protein (OPPA) insertion domain
e4i8cB2 B:246-470 Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II

Domains in the same PDB:

e4i8cA2 A:2-19,A:141-245,A:471-500 Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II
e4i8cA1 A:20-140 Alpha-beta plaits Oligo-peptide binding protein (OPPA) insertion domain Oligo-peptide binding protein (OPPA) insertion domain
e4i8cA3 A:246-470 Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II
e4i8cB3 B:3-19,B:141-245,B:471-501 Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II
e4i8cB1 B:20-140 Alpha-beta plaits Oligo-peptide binding protein (OPPA) insertion domain Oligo-peptide binding protein (OPPA) insertion domain
e4i8cB2 B:246-470 Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II
e4i8cC3 C:4-19,C:141-245,C:471-499 Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II
e4i8cC1 C:20-140 Alpha-beta plaits Oligo-peptide binding protein (OPPA) insertion domain Oligo-peptide binding protein (OPPA) insertion domain
e4i8cC2 C:246-470 Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II

Structural contacts of domain e4i8cB2 of H-group "Periplasmic binding protein-like II":

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The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e4i8cA2 B:x,y,z->A:X,Y,Z Periplasmic binding protein-like II Interaction Interface Pymol
e4i8cA3 B:x,y,z->A:X,Y,Z Periplasmic binding protein-like II Interaction Interface Pymol
e4i8cC2 B:X,Y,Z->C:x,y,z Periplasmic binding protein-like II Interaction Interface Pymol
e4i8cA1 B:-Y,X-Y,Z-1/3->A:x,y,z Oligo-peptide binding protein (OPPA) insertion domain Interaction Interface Pymol
e4i8cA3 B:-Y,X-Y,Z-1/3->A:x,y,z Periplasmic binding protein-like II Interaction Interface Pymol
e4i8cA3 B:x,y,z->A:-X,-Y,Z Periplasmic binding protein-like II Interaction Interface Pymol