ECOD: domain e4id5A8

Domain ID e4id5A8

A: a+b two layers
X: Alpha-beta plaits
H: Adenylyl and guanylyl cyclase catalytic domain-like
T: Adenylyl and guanylyl cyclase catalytic domain-like
F: RVT_1

UID:	001186525
Type:	Automatic domain
Parent:	e1ztwA1
Range:	A:-1-239
Ligands:	DMS T27
PDB:	4id5
PDB Description:	Reverse transcriptase/ribonuclease H
UniProt:	P03366
Hsap BLAST neighbor:	P63135
Species:

Domains in the same chain:

Download Pymol

e4id5A8	A:-1-239	Alpha-beta plaits	Adenylyl and guanylyl cyclase catalytic domain-like	Adenylyl and guanylyl cyclase catalytic domain-like
e4id5A7	A:240-316	helical bundle domain in reverse transcriptase-like polymerases	helical bundle domain in reverse transcriptase-like polymerases	helical bundle domain in reverse transcriptase-like polymerases
e4id5A5	A:317-428	Ribonuclease H-like	RNaseH-like domain in reverse transcriptase	RNaseH-like domain in reverse transcriptase
e4id5A6	A:429-554	Ribonuclease H-like	Ribonuclease H-like	Ribonuclease H-like

Domains in the same PDB:

e4id5A8	A:-1-239	Alpha-beta plaits	Adenylyl and guanylyl cyclase catalytic domain-like	Adenylyl and guanylyl cyclase catalytic domain-like
e4id5A7	A:240-316	helical bundle domain in reverse transcriptase-like polymerases	helical bundle domain in reverse transcriptase-like polymerases	helical bundle domain in reverse transcriptase-like polymerases
e4id5A5	A:317-428	Ribonuclease H-like	RNaseH-like domain in reverse transcriptase	RNaseH-like domain in reverse transcriptase
e4id5A6	A:429-554	Ribonuclease H-like	Ribonuclease H-like	Ribonuclease H-like
e4id5B5	B:5-230	Alpha-beta plaits	Adenylyl and guanylyl cyclase catalytic domain-like	Adenylyl and guanylyl cyclase catalytic domain-like
e4id5B1	B:231-304	helical bundle domain in reverse transcriptase-like polymerases	helical bundle domain in reverse transcriptase-like polymerases	helical bundle domain in reverse transcriptase-like polymerases
e4id5B2	B:305-428	Ribonuclease H-like	RNaseH-like domain in reverse transcriptase	RNaseH-like domain in reverse transcriptase

Structural contacts of domain e4id5A8 of H-group "Adenylyl and guanylyl cyclase catalytic domain-like":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain ID	Symmetry operator	H-group	Visualization
e4id5B5	A:X,Y,Z->B:x,y,z	Adenylyl and guanylyl cyclase catalytic domain-like	Interaction Interface Pymol
e4id5A8	A:x,y,z->A:-X+1,Y,-Z+1	Adenylyl and guanylyl cyclase catalytic domain-like	Interaction Interface Pymol
e4id5A8	A:-X+1,Y,-Z+1->A:x,y,z	Adenylyl and guanylyl cyclase catalytic domain-like	Interaction Interface Pymol
e4id5B5	A:x,y,z->B:X,Y-1,Z	Adenylyl and guanylyl cyclase catalytic domain-like	Interaction Interface Pymol
e4id5B2	A:x,y,z->B:X,Y-1,Z	RNaseH-like domain in reverse transcriptase	Interaction Interface Pymol
e4id5B2	A:x,y,z->B:-X+1/2,Y-1/2,-Z+1	RNaseH-like domain in reverse transcriptase	Interaction Interface Pymol
e4id5A6	A:x,y,z->A:-X+1/2,Y-1/2,-Z+1	Ribonuclease H-like	Interaction Interface Pymol
e4id5A7	A:-X+1/2,Y-1/2,-Z+1->A:x,y,z	helical bundle domain in reverse transcriptase-like polymerases	Interaction Interface Pymol