ECOD: domain e4ifyA8

Domain ID e4ifyA8

A: a+b two layers
X: Alpha-beta plaits
H: Adenylyl and guanylyl cyclase catalytic domain-like
T: Adenylyl and guanylyl cyclase catalytic domain-like
F: RVT_1

UID:	001186497
Type:	Automatic domain
Parent:	e1ztwA1
Range:	A:-1-239
Ligands:	1FD DMS T27
PDB:	4ify
PDB Description:	REVERSE TRANSCRIPTASE/RIBONUCLEASE H
UniProt:	P03366
Hsap BLAST neighbor:	P63135
Species:

Domains in the same chain:

Download Pymol

e4ifyA8	A:-1-239	Alpha-beta plaits	Adenylyl and guanylyl cyclase catalytic domain-like	Adenylyl and guanylyl cyclase catalytic domain-like
e4ifyA7	A:240-316	helical bundle domain in reverse transcriptase-like polymerases	helical bundle domain in reverse transcriptase-like polymerases	helical bundle domain in reverse transcriptase-like polymerases
e4ifyA5	A:317-428	Ribonuclease H-like	RNaseH-like domain in reverse transcriptase	RNaseH-like domain in reverse transcriptase
e4ifyA6	A:429-554	Ribonuclease H-like	Ribonuclease H-like	Ribonuclease H-like

Domains in the same PDB:

e4ifyA8	A:-1-239	Alpha-beta plaits	Adenylyl and guanylyl cyclase catalytic domain-like	Adenylyl and guanylyl cyclase catalytic domain-like
e4ifyA7	A:240-316	helical bundle domain in reverse transcriptase-like polymerases	helical bundle domain in reverse transcriptase-like polymerases	helical bundle domain in reverse transcriptase-like polymerases
e4ifyA5	A:317-428	Ribonuclease H-like	RNaseH-like domain in reverse transcriptase	RNaseH-like domain in reverse transcriptase
e4ifyA6	A:429-554	Ribonuclease H-like	Ribonuclease H-like	Ribonuclease H-like
e4ifyB5	B:5-230	Alpha-beta plaits	Adenylyl and guanylyl cyclase catalytic domain-like	Adenylyl and guanylyl cyclase catalytic domain-like
e4ifyB1	B:231-304	helical bundle domain in reverse transcriptase-like polymerases	helical bundle domain in reverse transcriptase-like polymerases	helical bundle domain in reverse transcriptase-like polymerases
e4ifyB2	B:305-428	Ribonuclease H-like	RNaseH-like domain in reverse transcriptase	RNaseH-like domain in reverse transcriptase

Structural contacts of domain e4ifyA8 of H-group "Adenylyl and guanylyl cyclase catalytic domain-like":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain ID	Symmetry operator	H-group	Visualization
e4ifyB5	A:X,Y,Z->B:x,y,z	Adenylyl and guanylyl cyclase catalytic domain-like	Interaction Interface Pymol
e4ifyA8	A:x,y,z->A:-X+1,Y,-Z+1	Adenylyl and guanylyl cyclase catalytic domain-like	Interaction Interface Pymol
e4ifyA8	A:-X+1,Y,-Z+1->A:x,y,z	Adenylyl and guanylyl cyclase catalytic domain-like	Interaction Interface Pymol
e4ifyB5	A:x,y,z->B:X,Y-1,Z	Adenylyl and guanylyl cyclase catalytic domain-like	Interaction Interface Pymol
e4ifyB2	A:x,y,z->B:X,Y-1,Z	RNaseH-like domain in reverse transcriptase	Interaction Interface Pymol
e4ifyB2	A:x,y,z->B:-X+1/2,Y-1/2,-Z+1	RNaseH-like domain in reverse transcriptase	Interaction Interface Pymol
e4ifyA6	A:x,y,z->A:-X+1/2,Y-1/2,-Z+1	Ribonuclease H-like	Interaction Interface Pymol
e4ifyA7	A:-X+1/2,Y-1/2,-Z+1->A:x,y,z	helical bundle domain in reverse transcriptase-like polymerases	Interaction Interface Pymol