ECOD: domain e4ii3D2

Domain ID e4ii3D2

A: a+b two layers
X: beta-Grasp
H: Ubiquitin-related
T: Ubiquitin-like
F: ubiquitin

UID:	001159267
Type:	Automatic domain
Parent:	e1ogwA1
Range:	D:1-76
Ligands:	ATP
PDB:	4ii3
PDB Description:	Ubiquitin-60S ribosomal protein L40
UniProt:	P0CH07
Hsap BLAST neighbor:	P62987
Species:

Domain
In chain context
In PDB context

Structure of domain e4ii3D2

Domains in the same chain:

Download Pymol

e4ii3D2	D:1-76	beta-Grasp	Ubiquitin-related	Ubiquitin-like

Domains in the same PDB:

e4ii3A3	A:14-173,A:260-398	Rossmann-like	Rossmann-related	Activating enzymes of the ubiquitin-like proteins
e4ii3A1	A:173-259	cradle loop barrel	RIFT-related	Alanine racemase-C
e4ii3A2	A:395-902	Rossmann-like	Rossmann-related	Activating enzymes of the ubiquitin-like proteins
e4ii3A4	A:903-1012	beta-Grasp	E2-binding domain of E1	E2-binding domain of E1
e4ii3B2	B:1-76	beta-Grasp	Ubiquitin-related	Ubiquitin-like
e4ii3C4	C:14-173,C:260-398	Rossmann-like	Rossmann-related	Activating enzymes of the ubiquitin-like proteins
e4ii3C1	C:174-259	cradle loop barrel	RIFT-related	Alanine racemase-C
e4ii3C5	C:395-902	Rossmann-like	Rossmann-related	Activating enzymes of the ubiquitin-like proteins
e4ii3C2	C:903-1012	beta-Grasp	E2-binding domain of E1	E2-binding domain of E1
e4ii3D2	D:1-76	beta-Grasp	Ubiquitin-related	Ubiquitin-like

Structural contacts of domain e4ii3D2 of H-group "Ubiquitin-related":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain ID	Symmetry operator	H-group	Visualization
e1ogwA1	D:x,y,z->C:X,Y,Z	Ubiquitin-related	Interaction Interface Pymol
e1ogwA1	D:x,y,z->C:X,Y,Z	Ubiquitin-related	Interaction Interface Pymol
e1ogwA1	D:x,y,z->C:X,Y,Z	Ubiquitin-related	Interaction Interface Pymol
e4ii3B2	D:x,y,z->B:X,Y,Z	Ubiquitin-related	Interaction Interface Pymol
e4ii3B2	D:-X-1/2,Y-1/2,-Z-1->A:x,y,z	Ubiquitin-related	Interaction Interface Pymol