Domain ID e4izjD3

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  • A: a+b two layers
  • X: Ribosomal protein S5 domain 2-like
  • H: Ribosomal protein S5 domain 2-like
  • T: Ribosomal protein S5 domain 2-like
  • F: Birna_VP4
UID: 001157424
Type: Automatic domain
Parent: e4izjA1
Range: D:514-650
Ligands: BME GOL
PDB: 4izj
PDB Description: YELLOWTAIL ASCITES VIRUS (YAV) VP4 PROTEASE
UniProt: P89521
Species:

Structure of domain e4izjD3

Domains in the same chain:

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e4izjD3 D:514-650 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e4izjD2 D:651-716 C-terminal subdomain in Lon-related proteases catalytic domains C-terminal subdomain in Lon-related proteases catalytic domains C-terminal subdomain in Lon-related proteases catalytic domains

Domains in the same PDB:

e4izjA1 A:514-650 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e4izjA2 A:651-716 C-terminal subdomain in Lon-related proteases catalytic domains C-terminal subdomain in Lon-related proteases catalytic domains C-terminal subdomain in Lon-related proteases catalytic domains
e4izjB3 B:515-650 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e4izjB2 B:651-716 C-terminal subdomain in Lon-related proteases catalytic domains C-terminal subdomain in Lon-related proteases catalytic domains C-terminal subdomain in Lon-related proteases catalytic domains
e4izjC3 C:514-650 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e4izjC2 C:651-716 C-terminal subdomain in Lon-related proteases catalytic domains C-terminal subdomain in Lon-related proteases catalytic domains C-terminal subdomain in Lon-related proteases catalytic domains
e4izjD3 D:514-650 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e4izjD2 D:651-716 C-terminal subdomain in Lon-related proteases catalytic domains C-terminal subdomain in Lon-related proteases catalytic domains C-terminal subdomain in Lon-related proteases catalytic domains
e4izjE3 E:514-650 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e4izjE2 E:651-716 C-terminal subdomain in Lon-related proteases catalytic domains C-terminal subdomain in Lon-related proteases catalytic domains C-terminal subdomain in Lon-related proteases catalytic domains

Structural contacts of domain e4izjD3 of H-group "Ribosomal protein S5 domain 2-like":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e4izjE2 D:X,Y,Z->E:x,y,z C-terminal subdomain in Lon-related proteases catalytic domains Interaction Interface Pymol
e4izjC3 D:-X,Y-1/2,-Z->C:x,y,z Ribosomal protein S5 domain 2-like Interaction Interface Pymol
e4izjC3 D:-X+1,Y-1/2,-Z->C:x,y,z Ribosomal protein S5 domain 2-like Interaction Interface Pymol
e4izjC3 D:x,y,z->C:-X,Y-1/2,-Z Ribosomal protein S5 domain 2-like Interaction Interface Pymol
e4izjC3 D:x,y,z->C:-X+1,Y-1/2,-Z Ribosomal protein S5 domain 2-like Interaction Interface Pymol
e4izjD2 D:x,y,z->D:-X,Y-1/2,-Z C-terminal subdomain in Lon-related proteases catalytic domains Interaction Interface Pymol