ECOD: domain e4j9kA1

Domain ID e4j9kA1

A: a+b two layers
X: Alpha-beta plaits
H: Adenylyl and guanylyl cyclase catalytic domain-like
T: Adenylyl and guanylyl cyclase catalytic domain-like
F: IMS

UID:	001624406
Type:	Automatic domain
Parent:	e1zetA3
Range:	A:-2-27,A:81-242
Ligands:	GOL MG XG4
PDB:	4j9k
PDB Description:	DNA POLYMERASE ETA
UniProt:	Q9Y253
Hsap BLAST neighbor:	Q9Y253
Species:	Homo sapiens

Domains in the same chain:

Download Pymol

e4j9kA1	A:-2-27,A:81-242	Alpha-beta plaits	Adenylyl and guanylyl cyclase catalytic domain-like	Adenylyl and guanylyl cyclase catalytic domain-like
e4j9kA3	A:28-80	Hypothetical protein Ta1206-like	Hypothetical protein Ta1206-like	Hypothetical protein Ta1206-like
e4j9kA4	A:243-316	HhH/H2TH	SAM/DNA-glycosylase	SAM domain-like
e4j9kA2	A:315-432	Reverse ferredoxin	Lesion bypass DNA polymerase (Y-family), little finger domain	Lesion bypass DNA polymerase (Y-family), little finger domain

Domains in the same PDB:

e4j9kA1	A:-2-27,A:81-242	Alpha-beta plaits	Adenylyl and guanylyl cyclase catalytic domain-like	Adenylyl and guanylyl cyclase catalytic domain-like
e4j9kA3	A:28-80	Hypothetical protein Ta1206-like	Hypothetical protein Ta1206-like	Hypothetical protein Ta1206-like
e4j9kA4	A:243-316	HhH/H2TH	SAM/DNA-glycosylase	SAM domain-like
e4j9kA2	A:315-432	Reverse ferredoxin	Lesion bypass DNA polymerase (Y-family), little finger domain	Lesion bypass DNA polymerase (Y-family), little finger domain

Structural contacts of domain e4j9kA1 of H-group "Adenylyl and guanylyl cyclase catalytic domain-like":

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The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain ID	Symmetry operator	H-group	Visualization
e4j9kA1	A:x,y,z->A:X-Y,X,Z+1/6	Adenylyl and guanylyl cyclase catalytic domain-like	Interaction Interface Pymol
e4j9kA2	A:x,y,z->A:X-Y,X,Z+1/6	Lesion bypass DNA polymerase (Y-family), little finger domain	Interaction Interface Pymol
e4j9kA1	A:X-Y,X,Z+1/6->A:x,y,z	Adenylyl and guanylyl cyclase catalytic domain-like	Interaction Interface Pymol
e4j9kA4	A:X-Y,X,Z+1/6->A:x,y,z	SAM/DNA-glycosylase	Interaction Interface Pymol
e4j9kA2	A:-X,-Y+1,Z-1/2->A:x,y,z	Lesion bypass DNA polymerase (Y-family), little finger domain	Interaction Interface Pymol
e4j9kA2	A:x,y,z->A:-Y+1,X-Y+1,Z+1/3	Lesion bypass DNA polymerase (Y-family), little finger domain	Interaction Interface Pymol
e4j9kA4	A:-Y,X-Y+1,Z+1/3->A:x,y,z	SAM/DNA-glycosylase	Interaction Interface Pymol