Domain ID e4jcdD1

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  • A: beta sandwiches
  • X: jelly-roll
  • H: Nucleoplasmin-like/VP (viral coat and capsid proteins)
  • T: Nucleoplasmin-like/VP (viral coat and capsid proteins)
  • F: Polyoma_coat
UID: 001096579
Type: Automatic domain
Parent: e1vpsA1
Range: D:24-288
Ligands: EDO GOL
PDB: 4jcd
PDB Description: Major capsid protein VP1
UniProt: P03089
Species: JC polyomavirus

Structure of domain e4jcdD1

Structural contacts of domain e4jcdD1 of H-group "Nucleoplasmin-like/VP (viral coat and capsid proteins)":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e4jcdC1 D:x,y,z->C:X,Y,Z Nucleoplasmin-like/VP (viral coat and capsid proteins) Interaction Interface Pymol
e4jcdE1 D:X,Y,Z->E:x,y,z Nucleoplasmin-like/VP (viral coat and capsid proteins) Interaction Interface Pymol
e4jcdE1 D:-X+1,Y,-Z+1->E:x,y,z Nucleoplasmin-like/VP (viral coat and capsid proteins) Interaction Interface Pymol
e4jcdB1 D:x,y,z->B:-X+1/2,Y-1/2,-Z Nucleoplasmin-like/VP (viral coat and capsid proteins) Interaction Interface Pymol
e4jcdA1 D:x,y,z->A:X-1/2,Y-1/2,Z Nucleoplasmin-like/VP (viral coat and capsid proteins) Interaction Interface Pymol