ECOD: domain e4jkmA1

Domain ID e4jkmA1

A: a/b barrels
X: TIM beta/alpha-barrel
H: TIM barrels
T: TIM barrels
F: Glyco_hydro_2_C

UID:	001349507
Type:	Automatic domain
Parent:	e1jz8A5
Range:	A:270-599
PDB:	4jkm
PDB Description:	Beta-glucuronidase
UniProt:	Q8XP19
Hsap BLAST neighbor:	P08236
Species:

Domain
In chain context
In PDB context

Structure of domain e4jkmA1

Domains in the same chain:

Download Pymol

e4jkmA3	A:-2-182	jelly-roll	Galactose-binding domain-like	Galactose-binding domain-like
e4jkmA2	A:183-275	Immunoglobulin-like beta-sandwich	Immunoglobulin-related	Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e4jkmA1	A:270-599	TIM beta/alpha-barrel	TIM barrels	TIM barrels

Domains in the same PDB:

e4jkmA3	A:-2-182	jelly-roll	Galactose-binding domain-like	Galactose-binding domain-like
e4jkmA2	A:183-275	Immunoglobulin-like beta-sandwich	Immunoglobulin-related	Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e4jkmA1	A:270-599	TIM beta/alpha-barrel	TIM barrels	TIM barrels
e4jkmB3	B:-2-182	jelly-roll	Galactose-binding domain-like	Galactose-binding domain-like
e4jkmB2	B:183-275	Immunoglobulin-like beta-sandwich	Immunoglobulin-related	Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e4jkmB1	B:270-599	TIM beta/alpha-barrel	TIM barrels	TIM barrels
e4jkmC1	C:111-378	Periplasmic binding protein-like II	Periplasmic binding protein-like II	Periplasmic binding protein-like II
e4jkmD1	D:18-120,D:269-375	Periplasmic binding protein-like II	Periplasmic binding protein-like II	Periplasmic binding protein-like II
e4jkmD2	D:121-268	Periplasmic binding protein-like II	Periplasmic binding protein-like II	Periplasmic binding protein-like II

Structural contacts of domain e4jkmA1 of H-group "TIM barrels":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain ID	Symmetry operator	H-group	Visualization
e4jkmB1	A:X,Y,Z->B:x,y,z	TIM barrels	Interaction Interface Pymol
e4jkmB3	A:X,Y,Z->B:x,y,z	Galactose-binding domain-like	Interaction Interface Pymol
e4jkmA3	A:x,y,z->A:-X+1,Y,-Z-1/2	Galactose-binding domain-like	Interaction Interface Pymol
e4jkmA1	A:x,y,z->A:-X+1,Y,-Z-1/2	TIM barrels	Interaction Interface Pymol
e4jkmA1	A:-X+1,Y,-Z-1/2->A:x,y,z	TIM barrels	Interaction Interface Pymol
e4jkmA3	A:-X+1,Y,-Z-1/2->A:x,y,z	Galactose-binding domain-like	Interaction Interface Pymol
e4jkmD1	A:X,Y,Z->D:x,y,z	Periplasmic binding protein-like II	Interaction Interface Pymol
e4jkmD2	A:X,Y,Z->D:x,y,z	Periplasmic binding protein-like II	Interaction Interface Pymol
e4jkmB1	A:-X+1,Y,-Z-1/2->B:x,y,z	TIM barrels	Interaction Interface Pymol
e4jkmA1	A:x,y,z->A:-X,Y,-Z-1/2	TIM barrels	Interaction Interface Pymol
e4jkmA1	A:-X,Y,-Z-1/2->A:x,y,z	TIM barrels	Interaction Interface Pymol
e4jkmA3	A:x,y,z->A:X-1,Y,Z	Galactose-binding domain-like	Interaction Interface Pymol