Domain ID e4jp5A1

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  • A: a/b three-layered sandwiches
  • X: Phosphorylase/hydrolase-like
  • H: Peptidyl-tRNA hydrolase-like
  • T: Peptidyl-tRNA hydrolase-like
  • F: PNP_UDP_1
UID: 001284085
Type: Automatic domain
Parent: e3pnpA1
Range: A:3-253
Ligands: EDO GOL
PDB: 4jp5
PDB Description: URIDINE PHOSPHORYLASE
UniProt: Q8D1I4
Hsap BLAST neighbor: O95045
Species: Yersinia pestis

Structure of domain e4jp5A1

Structural contacts of domain e4jp5A1 of H-group "Peptidyl-tRNA hydrolase-like":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e4jp5E1 A:X,Y,Z->E:x,y,z Peptidyl-tRNA hydrolase-like Interaction Interface Pymol
e4jp5B1 A:X,Y,Z->B:x,y,z Peptidyl-tRNA hydrolase-like Interaction Interface Pymol
e4jp5F1 A:X,Y,Z->F:x,y,z Peptidyl-tRNA hydrolase-like Interaction Interface Pymol
e4jp5C1 A:X,Y,Z->C:x,y,z Peptidyl-tRNA hydrolase-like Interaction Interface Pymol
e4jp5D1 A:x,y,z->D:-Y-1,X-Y,Z-1/3 Peptidyl-tRNA hydrolase-like Interaction Interface Pymol
e4jp5F1 A:x,y,z->F:X-1,Y,Z Peptidyl-tRNA hydrolase-like Interaction Interface Pymol
e4jp5C1 A:x,y,z->C:-Y-1,X-Y,Z-1/3 Peptidyl-tRNA hydrolase-like Interaction Interface Pymol