ECOD: domain e4k6mA5

Domain ID e4k6mA5

A: alpha bundles
X: helical bundle domain in reverse transcriptase-like polymerases
H: helical bundle domain in reverse transcriptase-like polymerases
T: helical bundle domain in reverse transcriptase-like polymerases
F: Flavi_NS5_thumb

UID:	001279064
Type:	Automatic domain
Parent:	e4c11B1
Range:	A:706-895
Ligands:	SO4 ZN
PDB:	4k6m
PDB Description:	POLYPROTEIN
UniProt:	P27395
Species:	Japanese encephalitis virus

Domain
In chain context
In PDB context

Structure of domain e4k6mA5

Domains in the same chain:

Download Pymol

e4k6mA6	A:5-265	Rossmann-like	Rossmann-related	S-adenosyl-L-methionine-dependent methyltransferases
e4k6mA4	A:266-705	Alpha-beta plaits	Adenylyl and guanylyl cyclase catalytic domain-like	Adenylyl and guanylyl cyclase catalytic domain-like
e4k6mA5	A:706-895	helical bundle domain in reverse transcriptase-like polymerases	helical bundle domain in reverse transcriptase-like polymerases	helical bundle domain in reverse transcriptase-like polymerases

Domains in the same PDB:

e4k6mA6	A:5-265	Rossmann-like	Rossmann-related	S-adenosyl-L-methionine-dependent methyltransferases
e4k6mA4	A:266-705	Alpha-beta plaits	Adenylyl and guanylyl cyclase catalytic domain-like	Adenylyl and guanylyl cyclase catalytic domain-like
e4k6mA5	A:706-895	helical bundle domain in reverse transcriptase-like polymerases	helical bundle domain in reverse transcriptase-like polymerases	helical bundle domain in reverse transcriptase-like polymerases
e4k6mB6	B:5-265	Rossmann-like	Rossmann-related	S-adenosyl-L-methionine-dependent methyltransferases
e4k6mB4	B:266-705	Alpha-beta plaits	Adenylyl and guanylyl cyclase catalytic domain-like	Adenylyl and guanylyl cyclase catalytic domain-like
e4k6mB5	B:706-895	helical bundle domain in reverse transcriptase-like polymerases	helical bundle domain in reverse transcriptase-like polymerases	helical bundle domain in reverse transcriptase-like polymerases

Structural contacts of domain e4k6mA5 of H-group "helical bundle domain in reverse transcriptase-like polymerases":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain ID	Symmetry operator	H-group	Visualization
e4k6mB5	A:X,Y,Z->B:x,y,z	helical bundle domain in reverse transcriptase-like polymerases	Interaction Interface Pymol
e4k6mB6	A:X,Y,Z->B:x,y,z	Rossmann-related	Interaction Interface Pymol