ECOD: domain e4k9qA1

Domain ID e4k9qA1

A: a/b three-layered sandwiches
X: Thiamin diphosphate-binding fold (THDP-binding)
H: Thiamin diphosphate-binding fold (THDP-binding)
T: Thiamin diphosphate-binding fold (THDP-binding)
F: TPP_enzyme_C

UID:	001290726
Type:	Automatic domain
Parent:	e1pvdA3
Range:	A:340-531
Ligands:	MG TPP
PDB:	4k9q
PDB Description:	BENZOYLFORMATE DECARBOXYLASE
UniProt:	A4SXU0
Species:	Polynucleobacter necessarius

Domains in the same chain:

Download Pymol

e4k9qA2	A:1-178	Thiamin diphosphate-binding fold (THDP-binding)	Thiamin diphosphate-binding fold (THDP-binding)	Thiamin diphosphate-binding fold (THDP-binding)
e4k9qA3	A:179-339	Rossmann-like	Rossmann-related	DHS-like NAD/FAD-binding domain
e4k9qA1	A:340-531	Thiamin diphosphate-binding fold (THDP-binding)	Thiamin diphosphate-binding fold (THDP-binding)	Thiamin diphosphate-binding fold (THDP-binding)

Domains in the same PDB:

e4k9qA2	A:1-178	Thiamin diphosphate-binding fold (THDP-binding)	Thiamin diphosphate-binding fold (THDP-binding)	Thiamin diphosphate-binding fold (THDP-binding)
e4k9qA3	A:179-339	Rossmann-like	Rossmann-related	DHS-like NAD/FAD-binding domain
e4k9qA1	A:340-531	Thiamin diphosphate-binding fold (THDP-binding)	Thiamin diphosphate-binding fold (THDP-binding)	Thiamin diphosphate-binding fold (THDP-binding)
e4k9qB2	B:2-178	Thiamin diphosphate-binding fold (THDP-binding)	Thiamin diphosphate-binding fold (THDP-binding)	Thiamin diphosphate-binding fold (THDP-binding)
e4k9qB3	B:179-339	Rossmann-like	Rossmann-related	DHS-like NAD/FAD-binding domain
e4k9qB1	B:340-531	Thiamin diphosphate-binding fold (THDP-binding)	Thiamin diphosphate-binding fold (THDP-binding)	Thiamin diphosphate-binding fold (THDP-binding)

Structural contacts of domain e4k9qA1 of H-group "Thiamin diphosphate-binding fold (THDP-binding)":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain ID	Symmetry operator	H-group	Visualization
e4k9qA2	A:x,y,z->A:-X,-Y+1,Z	Thiamin diphosphate-binding fold (THDP-binding)	Interaction Interface Pymol
e4k9qA1	A:x,y,z->A:-X,-Y+1,Z	Thiamin diphosphate-binding fold (THDP-binding)	Interaction Interface Pymol
e4k9qA1	A:-X,-Y+1,Z->A:x,y,z	Thiamin diphosphate-binding fold (THDP-binding)	Interaction Interface Pymol
e4k9qA2	A:-X,-Y+1,Z->A:x,y,z	Thiamin diphosphate-binding fold (THDP-binding)	Interaction Interface Pymol
e4k9qA3	A:x,y,z->A:X-1/2,-Y+1/2,-Z+1	Rossmann-related	Interaction Interface Pymol
e4k9qA1	A:x,y,z->A:X-1/2,-Y+1/2,-Z+1	Thiamin diphosphate-binding fold (THDP-binding)	Interaction Interface Pymol
e4k9qA1	A:X-1/2,-Y+1/2,-Z+1->A:x,y,z	Thiamin diphosphate-binding fold (THDP-binding)	Interaction Interface Pymol
e4k9qA2	A:X-1,Y,Z->A:x,y,z	Thiamin diphosphate-binding fold (THDP-binding)	Interaction Interface Pymol
e4k9qA1	A:x,y,z->A:-X+1,-Y+1,Z	Thiamin diphosphate-binding fold (THDP-binding)	Interaction Interface Pymol
e4k9qA1	A:-X+1,-Y+1,Z->A:x,y,z	Thiamin diphosphate-binding fold (THDP-binding)	Interaction Interface Pymol