ECOD: domain e4kcdB2

Domain ID e4kcdB2

A: a/b three-layered sandwiches
X: Periplasmic binding protein-like II
H: Periplasmic binding protein-like II
T: Periplasmic binding protein-like II
F: Lig_chan-Glu_bd

UID:	001521279
Type:	Automatic domain
Parent:	e1mqiA3
Range:	B:4-142,B:251-294
Ligands:	GOL
PDB:	4kcd
PDB Description:	Glutamate receptor ionotropic, NMDA 3A
UniProt:	Q9R1M7
Hsap BLAST neighbor:	Q8TCU5
Species:	Rattus norvegicus

Domains in the same chain:

Download Pymol

e4kcdB2	B:4-142,B:251-294	Periplasmic binding protein-like II	Periplasmic binding protein-like II	Periplasmic binding protein-like II
e4kcdB1	B:143-250	Periplasmic binding protein-like II	Periplasmic binding protein-like II	Periplasmic binding protein-like II

Domains in the same PDB:

e4kcdA1	A:3-142,A:251-292	Periplasmic binding protein-like II	Periplasmic binding protein-like II	Periplasmic binding protein-like II
e4kcdA2	A:143-250	Periplasmic binding protein-like II	Periplasmic binding protein-like II	Periplasmic binding protein-like II
e4kcdB2	B:4-142,B:251-294	Periplasmic binding protein-like II	Periplasmic binding protein-like II	Periplasmic binding protein-like II
e4kcdB1	B:143-250	Periplasmic binding protein-like II	Periplasmic binding protein-like II	Periplasmic binding protein-like II

Structural contacts of domain e4kcdB2 of H-group "Periplasmic binding protein-like II":

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The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain ID	Symmetry operator	H-group	Visualization
e4kcdA2	B:x,y,z->A:-X+1/2,-Y,Z-1/2	Periplasmic binding protein-like II	Interaction Interface Pymol
e4kcdA1	B:x,y,z->A:X,Y,Z	Periplasmic binding protein-like II	Interaction Interface Pymol
e4kcdA2	B:x,y,z->A:X,Y,Z	Periplasmic binding protein-like II	Interaction Interface Pymol
e4kcdB2	B:x,y,z->B:-X+1,Y-1/2,-Z-1/2	Periplasmic binding protein-like II	Interaction Interface Pymol
e4kcdB2	B:-X+1,Y-1/2,-Z-1/2->B:x,y,z	Periplasmic binding protein-like II	Interaction Interface Pymol
e4kcdA1	B:-X+1/2,-Y,Z-1/2->A:x,y,z	Periplasmic binding protein-like II	Interaction Interface Pymol
e4kcdA2	B:X-1/2,-Y-1/2,-Z->A:x,y,z	Periplasmic binding protein-like II	Interaction Interface Pymol