ECOD: domain e4kgnF1

Domain ID e4kgnF1

A: a/b three-layered sandwiches
X: alpha/beta knot
H: alpha/beta knot
T: alpha/beta knot
F: SpoU_methylase

UID:	000260170
Type:	Automatic domain
Parent:	e1mxiA1
Range:	F:-1-156
Ligands:	CL
PDB:	4kgn
PDB Description:	tRNA (cytidine(34)-2'-O)-methyltransferase
UniProt:	Q3JWH1
Species:

Domains in the same chain:

Download Pymol

e4kgnF1	F:-1-156	alpha/beta knot	alpha/beta knot	alpha/beta knot

Domains in the same PDB:

e4kgnA1	A:1-156	alpha/beta knot	alpha/beta knot	alpha/beta knot
e4kgnB2	B:1-156	alpha/beta knot	alpha/beta knot	alpha/beta knot
e4kgnC2	C:0-156	alpha/beta knot	alpha/beta knot	alpha/beta knot
e4kgnD1	D:-1-156	alpha/beta knot	alpha/beta knot	alpha/beta knot
e4kgnE2	E:1-156	alpha/beta knot	alpha/beta knot	alpha/beta knot
e4kgnF1	F:-1-156	alpha/beta knot	alpha/beta knot	alpha/beta knot
e4kgnG2	G:1-156	alpha/beta knot	alpha/beta knot	alpha/beta knot
e4kgnH2	H:1-156	alpha/beta knot	alpha/beta knot	alpha/beta knot

Structural contacts of domain e4kgnF1 of H-group "alpha/beta knot":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain ID	Symmetry operator	H-group	Visualization
e4kgnE2	F:x,y,z->E:X,Y,Z	alpha/beta knot	Interaction Interface Pymol
e4kgnB2	F:x,y,z->B:X,Y,Z-1	alpha/beta knot	Interaction Interface Pymol
e4kgnH2	F:x,y,z->H:-X+1,Y-1/2,-Z	alpha/beta knot	Interaction Interface Pymol
e4kgnE2	F:X-1,Y,Z->E:x,y,z	alpha/beta knot	Interaction Interface Pymol
e4kgnD1	F:x,y,z->D:X,Y,Z-1	alpha/beta knot	Interaction Interface Pymol
e4kgnA1	F:x,y,z->A:X,Y,Z	alpha/beta knot	Interaction Interface Pymol
e4kgnG2	F:x,y,z->G:-X+1,Y-1/2,-Z	alpha/beta knot	Interaction Interface Pymol