ECOD: domain e4kgqD5

Domain ID e4kgqD5

A: few secondary structure elements
X: EGF-like
H: EGF-related
T: TNF receptor-like
F: TNFR_c6

UID:	001184791
Type:	Automatic domain
Parent:	e1extA1
Range:	D:32-114
PDB:	4kgq
PDB Description:	Tumor necrosis factor receptor superfamily member 6B
UniProt:	O95407
Hsap BLAST neighbor:	O95407
Species:	Homo sapiens

Domains in the same chain:

Download Pymol

e4kgqD5	D:32-114	EGF-like	EGF-related	TNF receptor-like
e4kgqD6	D:115-195	EGF-like	EGF-related	TNF receptor-like

Domains in the same PDB:

e4kgqA1	A:92-240	jelly-roll	TNF-like	TNF-like
e4kgqB1	B:92-240	jelly-roll	TNF-like	TNF-like
e4kgqC1	C:33-114	EGF-like	EGF-related	TNF receptor-like
e4kgqC4	C:115-199	EGF-like	EGF-related	TNF receptor-like
e4kgqD5	D:32-114	EGF-like	EGF-related	TNF receptor-like
e4kgqD6	D:115-195	EGF-like	EGF-related	TNF receptor-like

Structural contacts of domain e4kgqD5 of H-group "EGF-related":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain ID	Symmetry operator	H-group	Visualization
e4kgqC4	D:x,y,z->C:X,Y,Z	EGF-related	Interaction Interface Pymol
e4kgqB1	D:-Z-1/2,-X,Y-1/2->B:x,y,z	TNF-like	Interaction Interface Pymol
e4kgqB1	D:X,Y,Z->B:x,y,z	TNF-like	Interaction Interface Pymol
e4kgqC1	D:x,y,z->C:-X,Y-1/2,-Z-1/2	EGF-related	Interaction Interface Pymol
e4kgqA1	D:x,y,z->A:-X,Y-1/2,-Z-1/2	TNF-like	Interaction Interface Pymol