Domain ID e4khnB2

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  • A: a+b two layers
  • X: Alpha-beta plaits
  • H: Adenylyl and guanylyl cyclase catalytic domain-like
  • T: Adenylyl and guanylyl cyclase catalytic domain-like
  • F: DNA_pol_B
UID: 001139830
Type: Automatic domain
Parent: e1tgoA4
Range: B:376-468,B:575-732
Ligands: CA SO4 XG4
PDB: 4khn
PDB Description: DNA POLYMERASE
UniProt: Q38087
Species: Enterobacteria phage RB69

Structure of domain e4khnB2

Domains in the same chain:

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e4khnB1 B:1-375 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e4khnB2 B:376-468,B:575-732 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like
e4khnB4 B:469-503,B:535-574 "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I
e4khnB3 B:733-901 "thumb" domain in bacteriophage RB69-like DNA polymerase I "thumb" domain in bacteriophage RB69-like DNA polymerase I "thumb" domain in bacteriophage RB69-like DNA polymerase I

Domains in the same PDB:

e4khnA4 A:1-375 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e4khnA7 A:376-468,A:575-732 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like
e4khnA6 A:469-574 "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I
e4khnA5 A:733-901 "thumb" domain in bacteriophage RB69-like DNA polymerase I "thumb" domain in bacteriophage RB69-like DNA polymerase I "thumb" domain in bacteriophage RB69-like DNA polymerase I
e4khnB1 B:1-375 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e4khnB2 B:376-468,B:575-732 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like
e4khnB4 B:469-503,B:535-574 "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I
e4khnB3 B:733-901 "thumb" domain in bacteriophage RB69-like DNA polymerase I "thumb" domain in bacteriophage RB69-like DNA polymerase I "thumb" domain in bacteriophage RB69-like DNA polymerase I

Structural contacts of domain e4khnB2 of H-group "Adenylyl and guanylyl cyclase catalytic domain-like":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e4khnA5 B:x,y,z->A:X,Y,Z-1 "thumb" domain in bacteriophage RB69-like DNA polymerase I Interaction Interface Pymol
e4khnA7 B:x,y,z->A:X,Y,Z-1 Adenylyl and guanylyl cyclase catalytic domain-like Interaction Interface Pymol