ECOD: domain e4ki6A6

Domain ID e4ki6A6

A: alpha bundles
X: "fingers" domain in bacteriophage RB69-like DNA polymerase I
H: "fingers" domain in bacteriophage RB69-like DNA polymerase I
T: "fingers" domain in bacteriophage RB69-like DNA polymerase I
F: Unmapped domains

UID:	001255983
Type:	Automatic domain
Parent:	e1ih7A1
Range:	A:469-574
Ligands:	NA TTP
PDB:	4ki6
PDB Description:	DNA POLYMERASE
UniProt:	Q38087
Species:	Enterobacteria phage RB69

Domain
In chain context
In PDB context

Structure of domain e4ki6A6

Domains in the same chain:

Download Pymol

e4ki6A4	A:1-375	Ribonuclease H-like	Ribonuclease H-like	Ribonuclease H-like
e4ki6A7	A:376-468,A:575-732	Alpha-beta plaits	Adenylyl and guanylyl cyclase catalytic domain-like	Adenylyl and guanylyl cyclase catalytic domain-like
e4ki6A6	A:469-574	"fingers" domain in bacteriophage RB69-like DNA polymerase I	"fingers" domain in bacteriophage RB69-like DNA polymerase I	"fingers" domain in bacteriophage RB69-like DNA polymerase I
e4ki6A5	A:733-902	"thumb" domain in bacteriophage RB69-like DNA polymerase I	"thumb" domain in bacteriophage RB69-like DNA polymerase I	"thumb" domain in bacteriophage RB69-like DNA polymerase I

Domains in the same PDB:

e4ki6A4	A:1-375	Ribonuclease H-like	Ribonuclease H-like	Ribonuclease H-like
e4ki6A7	A:376-468,A:575-732	Alpha-beta plaits	Adenylyl and guanylyl cyclase catalytic domain-like	Adenylyl and guanylyl cyclase catalytic domain-like
e4ki6A6	A:469-574	"fingers" domain in bacteriophage RB69-like DNA polymerase I	"fingers" domain in bacteriophage RB69-like DNA polymerase I	"fingers" domain in bacteriophage RB69-like DNA polymerase I
e4ki6A5	A:733-902	"thumb" domain in bacteriophage RB69-like DNA polymerase I	"thumb" domain in bacteriophage RB69-like DNA polymerase I	"thumb" domain in bacteriophage RB69-like DNA polymerase I

Structural contacts of domain e4ki6A6 of H-group ""fingers" domain in bacteriophage RB69-like DNA polymerase I":

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The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain ID	Symmetry operator	H-group	Visualization
e4ki6A5	A:x,y,z->A:-X,Y-1/2,-Z+1/2	"thumb" domain in bacteriophage RB69-like DNA polymerase I	Interaction Interface Pymol