Domain ID e4kjzA12

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  • A: a/b three-layered sandwiches
  • X: P-loop domains-like
  • H: P-loop domains-related
  • T: P-loop containing nucleoside triphosphate hydrolases
  • F: GTP_EFTU
UID: 001148932
Type: Automatic domain
Parent: e2c78A3
Range: A:68-233
Ligands: GDP
PDB: 4kjz
PDB Description: TRANSLATION INITIATION FACTOR IF-2
UniProt: P48515
Hsap BLAST neighbor: P46199
Species:

Structure of domain e4kjzA12

Domains in the same chain:

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e4kjzA11 A:3-67 HTH HTH Putative DNA-binding domain
e4kjzA12 A:68-233 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e4kjzA9 A:234-334 cradle loop barrel RIFT-related Alanine racemase-C
e4kjzA10 A:335-470 Initiation factor IF2/eIF5b, domain 3 Initiation factor IF2/eIF5b, domain 3 Initiation factor IF2/eIF5b, domain 3

Domains in the same PDB:

e4kjzA11 A:3-67 HTH HTH Putative DNA-binding domain
e4kjzA12 A:68-233 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e4kjzA9 A:234-334 cradle loop barrel RIFT-related Alanine racemase-C
e4kjzA10 A:335-470 Initiation factor IF2/eIF5b, domain 3 Initiation factor IF2/eIF5b, domain 3 Initiation factor IF2/eIF5b, domain 3
e4kjzB15 B:3-67 HTH HTH Putative DNA-binding domain
e4kjzB16 B:68-233 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e4kjzB13 B:234-334 cradle loop barrel RIFT-related Alanine racemase-C
e4kjzB14 B:335-466 Initiation factor IF2/eIF5b, domain 3 Initiation factor IF2/eIF5b, domain 3 Initiation factor IF2/eIF5b, domain 3
e4kjzC1 C:3-67 HTH HTH Putative DNA-binding domain
e4kjzC2 C:68-243 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e4kjzC3 C:244-344 cradle loop barrel RIFT-related Alanine racemase-C
e4kjzC4 C:345-474 Initiation factor IF2/eIF5b, domain 3 Initiation factor IF2/eIF5b, domain 3 Initiation factor IF2/eIF5b, domain 3
e4kjzD15 D:4-67 HTH HTH Putative DNA-binding domain
e4kjzD16 D:68-233 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e4kjzD13 D:234-334 cradle loop barrel RIFT-related Alanine racemase-C
e4kjzD14 D:335-469 Initiation factor IF2/eIF5b, domain 3 Initiation factor IF2/eIF5b, domain 3 Initiation factor IF2/eIF5b, domain 3

Structural contacts of domain e4kjzA12 of H-group "P-loop domains-related":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e4kjzB13 A:X,Y,Z->B:x,y,z RIFT-related Interaction Interface Pymol
e4kjzB14 A:X,Y,Z->B:x,y,z Initiation factor IF2/eIF5b, domain 3 Interaction Interface Pymol
e4kjzB16 A:X,Y,Z->B:x,y,z P-loop domains-related Interaction Interface Pymol
e4kjzB13 A:x,y,z->B:X,Y,Z-1 RIFT-related Interaction Interface Pymol
e4kjzB16 A:x,y,z->B:X,Y,Z-1 P-loop domains-related Interaction Interface Pymol
e4kjzB15 A:x,y,z->B:X,Y,Z-1 HTH Interaction Interface Pymol
e4kjzD14 A:x,y,z->D:X-1,Y,Z Initiation factor IF2/eIF5b, domain 3 Interaction Interface Pymol