ECOD: domain e4krfA4

Domain ID e4krfA4

A: beta barrels
X: SH3
H: SH3
T: SH3
F: PAZ

UID:	001393583
Type:	Automatic domain
Parent:	e1t2sA1
Range:	A:222-344
PDB:	4krf
PDB Description:	Protein argonaute-1
UniProt:	Q9UL18
Hsap BLAST neighbor:	Q9UL18
Species:	Homo sapiens

Domains in the same chain:

Download Pymol

e4krfA3	A:17-50,A:135-221,A:345-406	Alpha-beta plaits	Argonaute, N-terminal domain	Argonaute, N-terminal domain
e4krfA1	A:51-134	Alpha-beta plaits	Argonaute, N-terminal domain	Argonaute, N-terminal domain
e4krfA4	A:222-344	SH3	SH3	SH3
e4krfA5	A:407-576,A:835-857	Middle domain in Argonaute homologs	Middle domain in Argonaute homologs	Middle domain in Argonaute homologs
e4krfA2	A:577-833	Ribonuclease H-like	Ribonuclease H-like	Ribonuclease H-like

Domains in the same PDB:

e4krfA3	A:17-50,A:135-221,A:345-406	Alpha-beta plaits	Argonaute, N-terminal domain	Argonaute, N-terminal domain
e4krfA1	A:51-134	Alpha-beta plaits	Argonaute, N-terminal domain	Argonaute, N-terminal domain
e4krfA4	A:222-344	SH3	SH3	SH3
e4krfA5	A:407-576,A:835-857	Middle domain in Argonaute homologs	Middle domain in Argonaute homologs	Middle domain in Argonaute homologs
e4krfA2	A:577-833	Ribonuclease H-like	Ribonuclease H-like	Ribonuclease H-like

Structural contacts of domain e4krfA4 of H-group "SH3":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain ID	Symmetry operator	H-group	Visualization
e4krfA5	A:x,y,z->A:X,Y,Z-1	Middle domain in Argonaute homologs	Interaction Interface Pymol
e4krfA2	A:-X-1,Y-1/2,-Z-2->A:x,y,z	Ribonuclease H-like	Interaction Interface Pymol
e4krfA5	A:-X-1,Y-1/2,-Z-2->A:x,y,z	Middle domain in Argonaute homologs	Interaction Interface Pymol
e4krfA2	A:x,y,z->A:X-1,Y,Z-1	Ribonuclease H-like	Interaction Interface Pymol
e4krfA3	A:x,y,z->A:X-1,Y,Z-1	Argonaute, N-terminal domain	Interaction Interface Pymol