Domain ID e4lajF1

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  • A: a+b two layers
  • X: gp120 inner domain
  • H: gp120 inner domain
  • T: gp120 inner domain
  • F: GP120
UID: 001829584
Type: Automatic domain
Parent: e4rfnG2
Range: F:44-255,F:474-492
Ligands: NAG
PDB: 4laj
PDB Description: HIV-1 YU2 GP120 ENVELOPE GLYCOPROTEIN
UniProt: P35961
Species: Human immunodeficiency virus 1

Structure of domain e4lajF1

Domains in the same chain:

e4lajF1 F:44-255,F:474-492 gp120 inner domain gp120 inner domain gp120 inner domain
e4lajF2 F:256-473 Ribosomal protein L31e-like Ribosomal protein L31e/gp120 outer domain Ribosomal protein L31e/gp120 outer domain

Domains in the same PDB:

e4lajA2 A:44-255,A:474-492 gp120 inner domain gp120 inner domain gp120 inner domain
e4lajA1 A:256-473 Ribosomal protein L31e-like Ribosomal protein L31e/gp120 outer domain Ribosomal protein L31e/gp120 outer domain
e4lajB1 B:44-255,B:474-492 gp120 inner domain gp120 inner domain gp120 inner domain
e4lajB2 B:256-473 Ribosomal protein L31e-like Ribosomal protein L31e/gp120 outer domain Ribosomal protein L31e/gp120 outer domain
e4lajC1 C:1-28 omega toxin-like omega toxin-related Scorpion toxin-like
e4lajD1 D:1-28 omega toxin-like omega toxin-related Scorpion toxin-like
e4lajF1 F:44-255,F:474-492 gp120 inner domain gp120 inner domain gp120 inner domain
e4lajF2 F:256-473 Ribosomal protein L31e-like Ribosomal protein L31e/gp120 outer domain Ribosomal protein L31e/gp120 outer domain
e4lajG1 G:1-28 omega toxin-like omega toxin-related Scorpion toxin-like
e4lajH1 H:1-125 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e4lajI1 I:1-126 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e4lajJ2 J:44-255,J:474-492 gp120 inner domain gp120 inner domain gp120 inner domain
e4lajJ1 J:256-473 Ribosomal protein L31e-like Ribosomal protein L31e/gp120 outer domain Ribosomal protein L31e/gp120 outer domain
e4lajK1 K:1-28 omega toxin-like omega toxin-related Scorpion toxin-like
e4lajL1 L:1-124 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e4lajM1 M:1-124 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like

Structural contacts of domain e4lajF1 of H-group "gp120 inner domain":

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The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e4lajJ1 F:x,y,z->J:X,Y-1,Z Ribosomal protein L31e/gp120 outer domain Interaction Interface Pymol
e4lajJ2 F:x,y,z->J:X,Y-1,Z gp120 inner domain Interaction Interface Pymol
e4lajG1 F:X,Y,Z->G:x,y,z omega toxin-related Interaction Interface Pymol
e4lajI1 F:x,y,z->I:-X-1,Y-1/2,-Z-1 Immunoglobulin-related Interaction Interface Pymol
e4lajJ2 F:x,y,z->J:-X-1,Y-1/2,-Z gp120 inner domain Interaction Interface Pymol
e4lajA1 F:x,y,z->A:X,Y,Z Ribosomal protein L31e/gp120 outer domain Interaction Interface Pymol