Domain ID e4ldnA1

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  • A: a/b three-layered sandwiches
  • X: Phosphorylase/hydrolase-like
  • H: Peptidyl-tRNA hydrolase-like
  • T: Peptidyl-tRNA hydrolase-like
  • F: PNP_UDP_1
UID: 001065683
Type: Automatic domain
Parent: e3pnpA1
Range: A:-5-238
Ligands: EDO PO4
PDB: 4ldn
PDB Description: Purine nucleoside phosphorylase DeoD-type
UniProt: Q5DYV8
Species:

Structure of domain e4ldnA1

Structural contacts of domain e4ldnA1 of H-group "Peptidyl-tRNA hydrolase-like":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e4ldnA1 A:x,y,z->A:X-Y,-Y,-Z+1 Peptidyl-tRNA hydrolase-like Interaction Interface Pymol
e4ldnA1 A:X-Y,-Y,-Z+1->A:x,y,z Peptidyl-tRNA hydrolase-like Interaction Interface Pymol
e4ldnA1 A:x,y,z->A:Y,X,-Z+1 Peptidyl-tRNA hydrolase-like Interaction Interface Pymol
e4ldnA1 A:Y,X,-Z+1->A:x,y,z Peptidyl-tRNA hydrolase-like Interaction Interface Pymol
e4ldnA1 A:x,y,z->A:-X+2/3,-X+Y+1/3,-Z+4/3 Peptidyl-tRNA hydrolase-like Interaction Interface Pymol
e4ldnA1 A:-X+2/3,-X+Y+1/3,-Z+4/3->A:x,y,z Peptidyl-tRNA hydrolase-like Interaction Interface Pymol
e4ldnA1 A:x,y,z->A:X,Y,Z-1 Peptidyl-tRNA hydrolase-like Interaction Interface Pymol
e4ldnA1 A:X,Y,Z-1->A:x,y,z Peptidyl-tRNA hydrolase-like Interaction Interface Pymol
e4ldnA1 A:x,y,z->A:Y,X,-Z Peptidyl-tRNA hydrolase-like Interaction Interface Pymol
e4ldnA1 A:Y,X,-Z->A:x,y,z Peptidyl-tRNA hydrolase-like Interaction Interface Pymol
e4ldnA1 A:x,y,z->A:-X+2/3,-X+Y+1/3,-Z+1/3 Peptidyl-tRNA hydrolase-like Interaction Interface Pymol
e4ldnA1 A:-X+2/3,-X+Y+1/3,-Z+1/3->A:x,y,z Peptidyl-tRNA hydrolase-like Interaction Interface Pymol
e4ldnA1 A:x,y,z->A:-Y,X-Y,Z Peptidyl-tRNA hydrolase-like Interaction Interface Pymol
e4ldnA1 A:-Y,X-Y,Z->A:x,y,z Peptidyl-tRNA hydrolase-like Interaction Interface Pymol
e4ldnA1 A:x,y,z->A:X-Y,-Y,-Z+2 Peptidyl-tRNA hydrolase-like Interaction Interface Pymol
e4ldnA1 A:X-Y,-Y,-Z+2->A:x,y,z Peptidyl-tRNA hydrolase-like Interaction Interface Pymol