ECOD: domain e4lmfB2

Domain ID e4lmfB2

A: beta sandwiches
X: jelly-roll
H: Spermadhesin, CUB domain
T: Spermadhesin, CUB domain
F: CUB

UID:	001088401
Type:	Automatic domain
Parent:	e1sfpA1
Range:	B:2-112
Ligands:	CA
PDB:	4lmf
PDB Description:	Complement C1s subcomponent heavy chain
UniProt:	P09871
Hsap BLAST neighbor:	P09871
Species:	Homo sapiens

Domains in the same chain:

Download Pymol

e4lmfB2	B:2-112	jelly-roll	Spermadhesin, CUB domain	Spermadhesin, CUB domain
e4lmfB4	B:118-159	EGF-like	EGF-related	EGF/Laminin
e4lmfB3	B:160-277	jelly-roll	Spermadhesin, CUB domain	Spermadhesin, CUB domain

Domains in the same PDB:

e4lmfA2	A:2-112	jelly-roll	Spermadhesin, CUB domain	Spermadhesin, CUB domain
e4lmfA4	A:118-159	EGF-like	EGF-related	EGF/Laminin
e4lmfA3	A:160-277	jelly-roll	Spermadhesin, CUB domain	Spermadhesin, CUB domain
e4lmfB2	B:2-112	jelly-roll	Spermadhesin, CUB domain	Spermadhesin, CUB domain
e4lmfB4	B:118-159	EGF-like	EGF-related	EGF/Laminin
e4lmfB3	B:160-277	jelly-roll	Spermadhesin, CUB domain	Spermadhesin, CUB domain
e4lmfC2	C:2-112	jelly-roll	Spermadhesin, CUB domain	Spermadhesin, CUB domain
e4lmfC4	C:118-159	EGF-like	EGF-related	EGF/Laminin
e4lmfC3	C:160-277	jelly-roll	Spermadhesin, CUB domain	Spermadhesin, CUB domain
e4lmfD2	D:2-112	jelly-roll	Spermadhesin, CUB domain	Spermadhesin, CUB domain
e4lmfD4	D:118-159	EGF-like	EGF-related	EGF/Laminin
e4lmfD3	D:160-277	jelly-roll	Spermadhesin, CUB domain	Spermadhesin, CUB domain

Structural contacts of domain e4lmfB2 of H-group "Spermadhesin, CUB domain":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain ID	Symmetry operator	H-group	Visualization
e4lmfC4	B:X,Y,Z->C:x,y,z	EGF-related	Interaction Interface Pymol
e4lmfC3	B:X-1,Y,Z->C:x,y,z	Spermadhesin, CUB domain	Interaction Interface Pymol
e4lmfD3	B:x,y,z->D:-X,Y-1/2,-Z-1	Spermadhesin, CUB domain	Interaction Interface Pymol
e4lmfA2	B:x,y,z->A:-X-1,Y-1/2,-Z-1	Spermadhesin, CUB domain	Interaction Interface Pymol