ECOD: domain e4m8nD4

Domain ID e4m8nD4

A: a+b two layers
X: beta-Grasp
H: Ubiquitin-related
T: Ubiquitin-like
F: Plexin_RBD

UID:	001159160
Type:	Automatic domain
Parent:	e3hm6X2
Range:	D:767-903
PDB:	4m8n
PDB Description:	PlexinC1 Intracellular Region
UniProt:	Q5RGW1
Hsap BLAST neighbor:	O60486
Species:	Danio rerio

Domain
In chain context
In PDB context

Structure of domain e4m8nD4

Domains in the same chain:

Download Pymol

e4m8nD3	D:558-766,D:904-1145	GTPase activation domain, GAP	GTPase activation domain, GAP	GTPase activation domain, GAP
e4m8nD4	D:767-903	beta-Grasp	Ubiquitin-related	Ubiquitin-like

Domains in the same PDB:

e4m8nA1	A:554-774,A:923-1146	GTPase activation domain, GAP	GTPase activation domain, GAP	GTPase activation domain, GAP
e4m8nA2	A:775-913	beta-Grasp	Ubiquitin-related	Ubiquitin-like
e4m8nB1	B:553-775,B:926-1145	GTPase activation domain, GAP	GTPase activation domain, GAP	GTPase activation domain, GAP
e4m8nB2	B:775-913	beta-Grasp	Ubiquitin-related	Ubiquitin-like
e4m8nC1	C:558-779,C:932-1145	GTPase activation domain, GAP	GTPase activation domain, GAP	GTPase activation domain, GAP
e4m8nC2	C:775-913	beta-Grasp	Ubiquitin-related	Ubiquitin-like
e4m8nD3	D:558-766,D:904-1145	GTPase activation domain, GAP	GTPase activation domain, GAP	GTPase activation domain, GAP
e4m8nD4	D:767-903	beta-Grasp	Ubiquitin-related	Ubiquitin-like
e4m8nE1	E:1-168	P-loop domains-like	P-loop domains-related	P-loop containing nucleoside triphosphate hydrolases
e4m8nF1	F:2-167	P-loop domains-like	P-loop domains-related	P-loop containing nucleoside triphosphate hydrolases
e4m8nG1	G:1-168	P-loop domains-like	P-loop domains-related	P-loop containing nucleoside triphosphate hydrolases
e4m8nH1	H:1-167	P-loop domains-like	P-loop domains-related	P-loop containing nucleoside triphosphate hydrolases

Structural contacts of domain e4m8nD4 of H-group "Ubiquitin-related":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain ID	Symmetry operator	H-group	Visualization
e4m8nH1	D:X,Y,Z->H:x,y,z	P-loop domains-related	Interaction Interface Pymol
e4m8nA2	D:x,y,z->A:X,Y-1,Z	Ubiquitin-related	Interaction Interface Pymol
e4m8nA1	D:x,y,z->A:X,Y-1,Z	GTPase activation domain, GAP	Interaction Interface Pymol