Domain ID e4m8oA3

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  • A: mixed a+b and a/b
  • X: Ribonuclease H-like
  • H: Ribonuclease H-like
  • T: Ribonuclease H-like
  • F: DNA_pol_B_exo1
UID: 001121969
Type: Manual and representative domain
Range: A:282-511
Ligands: TAU
PDB: 4m8o
PDB Description: DNA POLYMERASE EPSILON CATALYTIC SUBUNIT A
UniProt: P21951
Hsap BLAST neighbor: Q07864
Species:

Structure of domain e4m8oA3

Domains in the same chain:

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e4m8oA1 A:31-136,A:248-281 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e4m8oA2 A:137-247 Alpha-beta plaits Family B DNA polymerase insertion domain Family B DNA polymerase insertion domain
e4m8oA3 A:282-511 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e4m8oA4 A:512-766,A:839-985 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like
e4m8oA5 A:767-838 "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I
e4m8oA6 A:986-1186 "thumb" domain in bacteriophage RB69-like DNA polymerase I "thumb" domain in bacteriophage RB69-like DNA polymerase I "thumb" domain in bacteriophage RB69-like DNA polymerase I

Domains in the same PDB:

e4m8oA1 A:31-136,A:248-281 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e4m8oA2 A:137-247 Alpha-beta plaits Family B DNA polymerase insertion domain Family B DNA polymerase insertion domain
e4m8oA3 A:282-511 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e4m8oA4 A:512-766,A:839-985 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like
e4m8oA5 A:767-838 "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I
e4m8oA6 A:986-1186 "thumb" domain in bacteriophage RB69-like DNA polymerase I "thumb" domain in bacteriophage RB69-like DNA polymerase I "thumb" domain in bacteriophage RB69-like DNA polymerase I

Structural contacts of domain e4m8oA3 of H-group "Ribonuclease H-like":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e4m8oA4 A:x,y,z->A:X,Y-1,Z Adenylyl and guanylyl cyclase catalytic domain-like Interaction Interface Pymol
e4m8oA2 A:x,y,z->A:X,Y-1,Z Family B DNA polymerase insertion domain Interaction Interface Pymol
e4m8oA4 A:X-1/2,Y-1/2,Z->A:x,y,z Adenylyl and guanylyl cyclase catalytic domain-like Interaction Interface Pymol
e4m8oA1 A:x,y,z->A:-X+1/2,Y-1/2,-Z Nucleic acid-binding proteins Interaction Interface Pymol