| UID: | 001124762 |
|---|---|
| Type: | Automatic domain |
| Parent: | e1jatB1 |
| Range: | B:7-184 |
| Ligands: | U94 |
| PDB: | 4mdk |
| PDB Description: | UBIQUITIN-CONJUGATING ENZYME E2 R1 |
| UniProt: | P49427 |
| Hsap BLAST neighbor: | P49427 |
| Species: | Homo sapiens |
Structure of domain e4mdkB1
Domains in the same chain:
| e4mdkB1 | B:7-184 | UBC-like | UBC-like | UBC-like |
Domains in the same PDB:
| e4mdkA1 | A:7-184 | UBC-like | UBC-like | UBC-like |
| e4mdkB1 | B:7-184 | UBC-like | UBC-like | UBC-like |
| e4mdkC1 | C:7-184 | UBC-like | UBC-like | UBC-like |
| e4mdkD2 | D:7-93,D:115-184 | UBC-like | UBC-like | UBC-like |
| e4mdkE1 | E:-1-74 | beta-Grasp | Ubiquitin-related | Ubiquitin-like |
| e4mdkF1 | F:-1-74 | beta-Grasp | Ubiquitin-related | Ubiquitin-like |
| e4mdkG1 | G:2-74 | beta-Grasp | Ubiquitin-related | Ubiquitin-like |
| e4mdkH1 | H:-1-72 | beta-Grasp | Ubiquitin-related | Ubiquitin-like |
Structural contacts of domain e4mdkB1 of H-group "UBC-like":
The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.
| Domain ID | Symmetry operator | H-group | Visualization |
|---|---|---|---|
| e4mdkF1 | B:X,Y,Z->F:x,y,z | Ubiquitin-related | Interaction Interface Pymol |
| e4mdkC1 | B:x,y,z->C:X-1,Y+1,Z | UBC-like | Interaction Interface Pymol |
| e4mdkD2 | B:X,Y,Z->D:x,y,z | UBC-like | Interaction Interface Pymol |
| e4mdkC1 | B:x,y,z->C:X-1,Y,Z | UBC-like | Interaction Interface Pymol |
| e4mdkH1 | B:X,Y,Z-1->H:x,y,z | Ubiquitin-related | Interaction Interface Pymol |
| e4mdkA1 | B:x,y,z->A:X,Y,Z | UBC-like | Interaction Interface Pymol |
| e4mdkG1 | B:X,Y,Z->G:x,y,z | Ubiquitin-related | Interaction Interface Pymol |
| e4mdkG1 | B:X,Y-1,Z->G:x,y,z | Ubiquitin-related | Interaction Interface Pymol |
