Domain ID e4mdsA1

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  • A: beta barrels
  • X: cradle loop barrel
  • H: RIFT-related
  • T: FMN-binding split barrel
  • F: Peptidase_C30
UID: 001106796
Type: Automatic domain
Parent: e2ducA2
Range: A:1-186
Ligands: 23H DMS
PDB: 4mds
PDB Description: 3C-like proteinase
UniProt: P0C6U8
Species:

Structure of domain e4mdsA1

Structural contacts of domain e4mdsA1 of H-group "RIFT-related":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e4mdsA1 A:x,y,z->A:-X,Y,-Z-1 RIFT-related Interaction Interface Pymol
e4mdsA2 A:x,y,z->A:-X,Y,-Z-1 Coronavirus main proteinase (3Cl-pro, putative coronavirus nsp2) C-terminal domain Interaction Interface Pymol
e4mdsA1 A:-X,Y,-Z-1->A:x,y,z RIFT-related Interaction Interface Pymol
e4mdsA2 A:-X,Y,-Z-1->A:x,y,z Coronavirus main proteinase (3Cl-pro, putative coronavirus nsp2) C-terminal domain Interaction Interface Pymol
e4mdsA1 A:x,y,z->A:-X-1/2,Y-1/2,-Z-1 RIFT-related Interaction Interface Pymol
e4mdsA2 A:x,y,z->A:-X-1/2,Y-1/2,-Z-1 Coronavirus main proteinase (3Cl-pro, putative coronavirus nsp2) C-terminal domain Interaction Interface Pymol
e4mdsA1 A:-X-1/2,Y-1/2,-Z-1->A:x,y,z RIFT-related Interaction Interface Pymol
e4mdsA2 A:x,y,z->A:-X,Y,-Z Coronavirus main proteinase (3Cl-pro, putative coronavirus nsp2) C-terminal domain Interaction Interface Pymol
e4mdsA2 A:-X,Y,-Z->A:x,y,z Coronavirus main proteinase (3Cl-pro, putative coronavirus nsp2) C-terminal domain Interaction Interface Pymol
e4mdsA2 A:x,y,z->A:X-1/2,Y-1/2,Z Coronavirus main proteinase (3Cl-pro, putative coronavirus nsp2) C-terminal domain Interaction Interface Pymol
e4mdsA2 A:x,y,z->A:-X,Y-1,-Z-1 Coronavirus main proteinase (3Cl-pro, putative coronavirus nsp2) C-terminal domain Interaction Interface Pymol
e4mdsA2 A:x,y,z->A:X,Y-1,Z Coronavirus main proteinase (3Cl-pro, putative coronavirus nsp2) C-terminal domain Interaction Interface Pymol