Domain ID e4mfdB2

Download files:
  • A: a/b barrels
  • X: TIM beta/alpha-barrel
  • H: TIM barrels
  • T: TIM barrels
  • F: HMGL-like
UID: 001387216
Type: Automatic domain
Parent: e1rqbA3
Range: B:493-837
Ligands: GOL MG OXL ZN
PDB: 4mfd
PDB Description: PYRUVATE CARBOXYLASE
UniProt: Q2K340
Hsap BLAST neighbor: P11498
Species:

Structure of domain e4mfdB2

Domains in the same chain:

Download Pymol

e4mfdB4 B:471-492,B:1001-1067 Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related a+b domain in pyruvate carboxylase
e4mfdB2 B:493-837 TIM beta/alpha-barrel TIM barrels TIM barrels
e4mfdB1 B:838-959 RuvA-C post-HMGL domain-like post-HMGL domain-like
e4mfdB3 B:960-1000 RuvA-C post-HMGL domain-like post-HMGL domain-like

Domains in the same PDB:

e4mfdA3 A:493-837 TIM beta/alpha-barrel TIM barrels TIM barrels
e4mfdA4 A:838-958 RuvA-C post-HMGL domain-like post-HMGL domain-like
e4mfdA2 A:960-1000 RuvA-C post-HMGL domain-like post-HMGL domain-like
e4mfdA7 A:1001-1067 Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related a+b domain in pyruvate carboxylase
e4mfdB4 B:471-492,B:1001-1067 Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related a+b domain in pyruvate carboxylase
e4mfdB2 B:493-837 TIM beta/alpha-barrel TIM barrels TIM barrels
e4mfdB1 B:838-959 RuvA-C post-HMGL domain-like post-HMGL domain-like
e4mfdB3 B:960-1000 RuvA-C post-HMGL domain-like post-HMGL domain-like
e4mfdC4 C:471-492,C:1001-1067 Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related a+b domain in pyruvate carboxylase
e4mfdC2 C:493-837 TIM beta/alpha-barrel TIM barrels TIM barrels
e4mfdC1 C:838-959 RuvA-C post-HMGL domain-like post-HMGL domain-like
e4mfdC3 C:960-1000 RuvA-C post-HMGL domain-like post-HMGL domain-like
e4mfdD4 D:471-492,D:1001-1067 Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related a+b domain in pyruvate carboxylase
e4mfdD2 D:493-837 TIM beta/alpha-barrel TIM barrels TIM barrels
e4mfdD1 D:838-959 RuvA-C post-HMGL domain-like post-HMGL domain-like
e4mfdD3 D:960-1000 RuvA-C post-HMGL domain-like post-HMGL domain-like

Structural contacts of domain e4mfdB2 of H-group "TIM barrels":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e4mfdD2 B:X,Y,Z->D:x,y,z TIM barrels Interaction Interface Pymol
e4mfdD1 B:X,Y,Z->D:x,y,z post-HMGL domain-like Interaction Interface Pymol
e4mfdA4 B:-X+3/2,-Y,Z-1/2->A:x,y,z post-HMGL domain-like Interaction Interface Pymol