Domain ID e4n9fJ1

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  • A: a+b two layers
  • X: beta-Grasp
  • H: Ubiquitin-related
  • T: Ubiquitin-like
  • F: ubiquitin
UID: 001143202
Type: Automatic domain
Parent: e2zeqA1
Range: J:2-98
PDB: 4n9f
PDB Description: TRANSCRIPTION ELONGATION FACTOR B POLYPEPTIDE 2
UniProt: Q15370
Hsap BLAST neighbor: Q15370
Species: Homo sapiens

Structure of domain e4n9fJ1

Domains in the same chain:

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e4n9fJ1 J:2-98 beta-Grasp Ubiquitin-related Ubiquitin-like

Domains in the same PDB:

e4n9f01 0:5-135 CBF-like Core binding factor beta, CBF Core binding factor beta, CBF
e4n9f11 1:3-173 Virion infectivity factor Vif Virion infectivity factor Vif Virion infectivity factor Vif
e4n9f21 2:3-173 Virion infectivity factor Vif Virion infectivity factor Vif Virion infectivity factor Vif
e4n9f31 3:11-319 Repetitive alpha hairpins ARM repeat ARM repeat
e4n9f41 4:1-98 beta-Grasp Ubiquitin-related Ubiquitin-like
e4n9f51 5:17-111 POZ domain POZ domain POZ domain
e4n9f61 6:6-135 CBF-like Core binding factor beta, CBF Core binding factor beta, CBF
e4n9f71 7:3-172 Virion infectivity factor Vif Virion infectivity factor Vif Virion infectivity factor Vif
e4n9f91 9:11-319 Repetitive alpha hairpins ARM repeat ARM repeat
e4n9fa1 a:3-135 CBF-like Core binding factor beta, CBF Core binding factor beta, CBF
e4n9fb1 b:1-172 Virion infectivity factor Vif Virion infectivity factor Vif Virion infectivity factor Vif
e4n9fB1 B:17-111 POZ domain POZ domain POZ domain
e4n9fc1 c:5-135 CBF-like Core binding factor beta, CBF Core binding factor beta, CBF
e4n9fC1 C:11-320 Repetitive alpha hairpins ARM repeat ARM repeat
e4n9fd1 d:3-172 Virion infectivity factor Vif Virion infectivity factor Vif Virion infectivity factor Vif
e4n9fD1 D:1-98 beta-Grasp Ubiquitin-related Ubiquitin-like
e4n9fe1 e:1-79 beta-Grasp Ubiquitin-related Ubiquitin-like
e4n9fE1 E:17-111 POZ domain POZ domain POZ domain
e4n9ff1 f:11-320 Repetitive alpha hairpins ARM repeat ARM repeat
e4n9fF1 F:3-135 CBF-like Core binding factor beta, CBF Core binding factor beta, CBF
e4n9fg1 g:1-98 beta-Grasp Ubiquitin-related Ubiquitin-like
e4n9fG1 G:3-172 Virion infectivity factor Vif Virion infectivity factor Vif Virion infectivity factor Vif
e4n9fh1 h:17-111 POZ domain POZ domain POZ domain
e4n9fH1 H:1-98 beta-Grasp Ubiquitin-related Ubiquitin-like
e4n9fi1 i:2-135 CBF-like Core binding factor beta, CBF Core binding factor beta, CBF
e4n9fI1 I:11-320 Repetitive alpha hairpins ARM repeat ARM repeat
e4n9fj1 j:2-171 Virion infectivity factor Vif Virion infectivity factor Vif Virion infectivity factor Vif
e4n9fJ1 J:2-98 beta-Grasp Ubiquitin-related Ubiquitin-like
e4n9fk1 k:5-135 CBF-like Core binding factor beta, CBF Core binding factor beta, CBF
e4n9fK1 K:18-111 POZ domain POZ domain POZ domain
e4n9fl1 l:11-320 Repetitive alpha hairpins ARM repeat ARM repeat
e4n9fL1 L:5-135 CBF-like Core binding factor beta, CBF Core binding factor beta, CBF
e4n9fm1 m:1-98 beta-Grasp Ubiquitin-related Ubiquitin-like
e4n9fM1 M:2-172 Virion infectivity factor Vif Virion infectivity factor Vif Virion infectivity factor Vif
e4n9fn1 n:17-111 POZ domain POZ domain POZ domain
e4n9fN1 N:5-135 CBF-like Core binding factor beta, CBF Core binding factor beta, CBF
e4n9fo1 o:5-135 CBF-like Core binding factor beta, CBF Core binding factor beta, CBF
e4n9fO1 O:11-320 Repetitive alpha hairpins ARM repeat ARM repeat
e4n9fp1 p:3-171 Virion infectivity factor Vif Virion infectivity factor Vif Virion infectivity factor Vif
e4n9fP1 P:1-98 beta-Grasp Ubiquitin-related Ubiquitin-like
e4n9fq1 q:3-171 Virion infectivity factor Vif Virion infectivity factor Vif Virion infectivity factor Vif
e4n9fQ1 Q:17-111 POZ domain POZ domain POZ domain
e4n9fr1 r:11-320 Repetitive alpha hairpins ARM repeat ARM repeat
e4n9fR1 R:5-157 CBF-like Core binding factor beta, CBF Core binding factor beta, CBF
e4n9fs1 s:1-98 beta-Grasp Ubiquitin-related Ubiquitin-like
e4n9fS1 S:3-173 Virion infectivity factor Vif Virion infectivity factor Vif Virion infectivity factor Vif
e4n9ft1 t:17-111 POZ domain POZ domain POZ domain
e4n9fT1 T:17-111 POZ domain POZ domain POZ domain
e4n9fu1 u:5-135 CBF-like Core binding factor beta, CBF Core binding factor beta, CBF
e4n9fU1 U:11-321 Repetitive alpha hairpins ARM repeat ARM repeat
e4n9fv1 v:3-173 Virion infectivity factor Vif Virion infectivity factor Vif Virion infectivity factor Vif
e4n9fV1 V:11-320 Repetitive alpha hairpins ARM repeat ARM repeat
e4n9fw1 w:11-319 Repetitive alpha hairpins ARM repeat ARM repeat
e4n9fW1 W:1-98 beta-Grasp Ubiquitin-related Ubiquitin-like
e4n9fx1 x:12-319 Repetitive alpha hairpins ARM repeat ARM repeat
e4n9fX1 X:1-98 beta-Grasp Ubiquitin-related Ubiquitin-like
e4n9fy1 y:1-98 beta-Grasp Ubiquitin-related Ubiquitin-like
e4n9fY1 Y:17-111 POZ domain POZ domain POZ domain
e4n9fz1 z:17-111 POZ domain POZ domain POZ domain
e4n9fZ1 Z:17-111 POZ domain POZ domain POZ domain

Structural contacts of domain e4n9fJ1 of H-group "Ubiquitin-related":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e4n9fK1 J:x,y,z->K:X,Y,Z POZ domain Interaction Interface Pymol