Domain ID e4nbiA1

Download files:
  • A: a/b three-layered sandwiches
  • X: DTD-like
  • H: DTD-like (Pfam 02580)
  • T: DTD-like (Pfam 02580)
  • F: Tyr_Deacylase
UID: 001125353
Type: Automatic domain
Parent: e1jkeA1
Range: A:1-163
Ligands: D3Y PGE
PDB: 4nbi
PDB Description: D-tyrosyl-tRNA(Tyr) deacylase
UniProt: Q8IIS0
Hsap BLAST neighbor: Q8TEA8
Species:

Structure of domain e4nbiA1

Structural contacts of domain e4nbiA1 of H-group "DTD-like (Pfam 02580)":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e4nbiB1 A:X,Y,Z->B:x,y,z DTD-like (Pfam 02580) Interaction Interface Pymol
e4nbiA1 A:x,y,z->A:-X-1,Y,-Z-1 DTD-like (Pfam 02580) Interaction Interface Pymol
e4nbiA1 A:-X-1,Y,-Z-1->A:x,y,z DTD-like (Pfam 02580) Interaction Interface Pymol
e4nbiB1 A:-X-1/2,Y-1/2,-Z->B:x,y,z DTD-like (Pfam 02580) Interaction Interface Pymol
e4nbiA1 A:x,y,z->A:-X-1/2,Y-1/2,-Z-1 DTD-like (Pfam 02580) Interaction Interface Pymol
e4nbiA1 A:-X-1/2,Y-1/2,-Z-1->A:x,y,z DTD-like (Pfam 02580) Interaction Interface Pymol
e4nbiB1 A:-X-1,Y,-Z-1->B:x,y,z DTD-like (Pfam 02580) Interaction Interface Pymol
e4nbiB1 A:x,y,z->B:X,Y,Z-1 DTD-like (Pfam 02580) Interaction Interface Pymol
e4nbiA1 A:x,y,z->A:-X,Y,-Z DTD-like (Pfam 02580) Interaction Interface Pymol
e4nbiA1 A:-X,Y,-Z->A:x,y,z DTD-like (Pfam 02580) Interaction Interface Pymol
e4nbiB1 A:-X-1/2,Y-1/2,-Z-1->B:x,y,z DTD-like (Pfam 02580) Interaction Interface Pymol
e4nbiB1 A:-X-1,Y,-Z->B:x,y,z DTD-like (Pfam 02580) Interaction Interface Pymol