Domain ID e4ncoA3

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  • A: a+b two layers
  • X: Ribosomal protein L31e-like
  • H: Ribosomal protein L31e/gp120 outer domain
  • T: Ribosomal protein L31e/gp120 outer domain
  • F: GP120
UID: 001829606
Type: Automatic domain
Parent: e4tvpG1
Range: A:256-473
Ligands: NAG
PDB: 4nco
PDB Description: BG505 SOSIP GP120
UniProt: Q2N0S6
Species: Human immunodeficiency virus 1

Structure of domain e4ncoA3

Domains in the same chain:

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e4ncoA2 A:44-119,A:203-255,A:474-493 gp120 inner domain gp120 inner domain gp120 inner domain
e4ncoA1 A:120-178,A:191-202 V1/V2 domain in HIV gp120 V1/V2 domain in HIV gp120 V1/V2 domain in HIV gp120
e4ncoA3 A:256-473 Ribosomal protein L31e-like Ribosomal protein L31e/gp120 outer domain Ribosomal protein L31e/gp120 outer domain

Domains in the same PDB:

e4ncoA2 A:44-119,A:203-255,A:474-493 gp120 inner domain gp120 inner domain gp120 inner domain
e4ncoA1 A:120-178,A:191-202 V1/V2 domain in HIV gp120 V1/V2 domain in HIV gp120 V1/V2 domain in HIV gp120
e4ncoA3 A:256-473 Ribosomal protein L31e-like Ribosomal protein L31e/gp120 outer domain Ribosomal protein L31e/gp120 outer domain
e4ncoC4 C:8-107 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e4ncoC3 C:108-209 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e4ncoD2 D:1-110 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e4ncoD1 D:111-211 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e4ncoE3 E:44-119,E:203-255,E:474-493 gp120 inner domain gp120 inner domain gp120 inner domain
e4ncoE1 E:120-178,E:191-202 V1/V2 domain in HIV gp120 V1/V2 domain in HIV gp120 V1/V2 domain in HIV gp120
e4ncoE2 E:256-473 Ribosomal protein L31e-like Ribosomal protein L31e/gp120 outer domain Ribosomal protein L31e/gp120 outer domain
e4ncoG4 G:8-107 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e4ncoG3 G:108-209 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e4ncoH2 H:1-110 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e4ncoH1 H:111-211 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e4ncoI1 I:44-119,I:203-255,I:474-493 gp120 inner domain gp120 inner domain gp120 inner domain
e4ncoI3 I:120-178,I:191-202 V1/V2 domain in HIV gp120 V1/V2 domain in HIV gp120 V1/V2 domain in HIV gp120
e4ncoI2 I:256-473 Ribosomal protein L31e-like Ribosomal protein L31e/gp120 outer domain Ribosomal protein L31e/gp120 outer domain
e4ncoK2 K:8-108 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e4ncoK1 K:109-209 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e4ncoL2 L:1-110 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e4ncoL1 L:111-211 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like

Structural contacts of domain e4ncoA3 of H-group "Ribosomal protein L31e/gp120 outer domain":

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The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e4ncoC4 A:X,Y,Z->C:x,y,z Immunoglobulin-related Interaction Interface Pymol
e4ncoD2 A:X,Y,Z->D:x,y,z Immunoglobulin-related Interaction Interface Pymol
e4ncoE1 A:X,Y,Z->E:x,y,z V1/V2 domain in HIV gp120 Interaction Interface Pymol