ECOD: domain e4nwvB2

Domain ID e4nwvB2

A: beta sandwiches
X: jelly-roll
H: Nucleoplasmin-like/VP (viral coat and capsid proteins)
T: Nucleoplasmin-like/VP (viral coat and capsid proteins)
F: Capsid-VNN

UID:	001696282
Type:	Automatic domain
Parent:	e4nwvA1
Range:	B:45-214
Ligands:	CA
PDB:	4nwv
PDB Description:	Capsid protein
UniProt:	E9KNV5
Species:	Orsay virus

Domains in the same chain:

Download Pymol

e4nwvB2	B:45-214	jelly-roll	Nucleoplasmin-like/VP (viral coat and capsid proteins)	Nucleoplasmin-like/VP (viral coat and capsid proteins)
e4nwvB1	B:215-389	cradle loop barrel	Capsid protein protrusion (P) domain	Capsid protein protrusion (P) domain

Domains in the same PDB:

e4nwvA1	A:30-214	jelly-roll	Nucleoplasmin-like/VP (viral coat and capsid proteins)	Nucleoplasmin-like/VP (viral coat and capsid proteins)
e4nwvA2	A:215-384	cradle loop barrel	Capsid protein protrusion (P) domain	Capsid protein protrusion (P) domain
e4nwvB2	B:45-214	jelly-roll	Nucleoplasmin-like/VP (viral coat and capsid proteins)	Nucleoplasmin-like/VP (viral coat and capsid proteins)
e4nwvB1	B:215-389	cradle loop barrel	Capsid protein protrusion (P) domain	Capsid protein protrusion (P) domain
e4nwvC1	C:44-214	jelly-roll	Nucleoplasmin-like/VP (viral coat and capsid proteins)	Nucleoplasmin-like/VP (viral coat and capsid proteins)
e4nwvC2	C:215-389	cradle loop barrel	Capsid protein protrusion (P) domain	Capsid protein protrusion (P) domain

Structural contacts of domain e4nwvB2 of H-group "Nucleoplasmin-like/VP (viral coat and capsid proteins)":

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The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain ID	Symmetry operator	H-group	Visualization
e4nwvC1	B:X,Y,Z->C:x,y,z	Nucleoplasmin-like/VP (viral coat and capsid proteins)	Interaction Interface Pymol
e4nwvA1	B:x,y,z->A:X,Y,Z	Nucleoplasmin-like/VP (viral coat and capsid proteins)	Interaction Interface Pymol
e4nwvC2	B:-X,-Y,Z->C:x,y,z	Capsid protein protrusion (P) domain	Interaction Interface Pymol
e4nwvC1	B:-X,-Y,Z->C:x,y,z	Nucleoplasmin-like/VP (viral coat and capsid proteins)	Interaction Interface Pymol
e4nwvA1	B:x,y,z->A:-X,-Y,Z	Nucleoplasmin-like/VP (viral coat and capsid proteins)	Interaction Interface Pymol