Domain ID e4o1pC3

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  • A: alpha bundles
  • X: Four-helical up-and-down bundle
  • H: HEPN
  • T: Nucleotidyltransferase substrate binding subunit/domain
  • F: Ribonuc_2-5A
UID: 001144180
Type: Manual and representative domain
Range: C:584-729
PDB: 4o1p
PDB Description: Ribonuclease L
UniProt: A5H025
Hsap BLAST neighbor: Q05823
Species: Sus scrofa

Structure of domain e4o1pC3

Domains in the same chain:

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e4o1pC1 C:22-322 Repetitive alpha hairpins Ankyrin repeat Ankyrin repeat
e4o1pC2 C:333-583 Protein kinase/SAICAR synthase/ATP-grasp Protein kinase/SAICAR synthase/ATP-grasp Protein kinase
e4o1pC3 C:584-729 Four-helical up-and-down bundle HEPN Nucleotidyltransferase substrate binding subunit/domain

Domains in the same PDB:

e4o1pA3 A:22-322 Repetitive alpha hairpins Ankyrin repeat Ankyrin repeat
e4o1pA2 A:323-569 Protein kinase/SAICAR synthase/ATP-grasp Protein kinase/SAICAR synthase/ATP-grasp Protein kinase
e4o1pA1 A:570-643,A:663-729 Four-helical up-and-down bundle HEPN Nucleotidyltransferase substrate binding subunit/domain
e4o1pB3 B:22-322 Repetitive alpha hairpins Ankyrin repeat Ankyrin repeat
e4o1pB2 B:323-569 Protein kinase/SAICAR synthase/ATP-grasp Protein kinase/SAICAR synthase/ATP-grasp Protein kinase
e4o1pB1 B:570-643,B:663-729 Four-helical up-and-down bundle HEPN Nucleotidyltransferase substrate binding subunit/domain
e4o1pC1 C:22-322 Repetitive alpha hairpins Ankyrin repeat Ankyrin repeat
e4o1pC2 C:333-583 Protein kinase/SAICAR synthase/ATP-grasp Protein kinase/SAICAR synthase/ATP-grasp Protein kinase
e4o1pC3 C:584-729 Four-helical up-and-down bundle HEPN Nucleotidyltransferase substrate binding subunit/domain
e4o1pD3 D:22-322 Repetitive alpha hairpins Ankyrin repeat Ankyrin repeat
e4o1pD2 D:323-569 Protein kinase/SAICAR synthase/ATP-grasp Protein kinase/SAICAR synthase/ATP-grasp Protein kinase
e4o1pD1 D:570-643,D:663-729 Four-helical up-and-down bundle HEPN Nucleotidyltransferase substrate binding subunit/domain

Structural contacts of domain e4o1pC3 of H-group "HEPN":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e4o1pD1 C:X,Y,Z->D:x,y,z HEPN Interaction Interface Pymol
e4o1pD2 C:X,Y,Z->D:x,y,z Protein kinase/SAICAR synthase/ATP-grasp Interaction Interface Pymol
e4o1pD2 C:X-1,Y,Z->D:x,y,z Protein kinase/SAICAR synthase/ATP-grasp Interaction Interface Pymol
e4o1pD1 C:X-1,Y,Z->D:x,y,z HEPN Interaction Interface Pymol