ECOD: domain e4o2dB2

Domain ID e4o2dB2

A: a+b three layers
X: Class II aaRS and biotin synthetases
H: Class II aaRS and biotin synthetases
T: Class II aaRS and biotin synthetases
F: tRNA-synt_2

UID:	001140905
Type:	Manual and representative domain
Range:	B:107-287,B:413-583
Ligands:	ASP TRS
PDB:	4o2d
PDB Description:	Aspartate--tRNA ligase
UniProt:	A0QWN3
Hsap BLAST neighbor:	Q6PI48
Species:

Domain
In chain context
In PDB context

Structure of domain e4o2dB2

Domains in the same chain:

Download Pymol

e4o2dB1	B:2-106	OB-fold	Nucleic acid-binding proteins	Nucleic acid-binding proteins
e4o2dB2	B:107-287,B:413-583	Class II aaRS and biotin synthetases	Class II aaRS and biotin synthetases	Class II aaRS and biotin synthetases
e4o2dB3	B:288-339,B:383-412	Prokaryotic AspRS, insert domain	Prokaryotic AspRS, insert domain	Prokaryotic AspRS, insert domain

Domains in the same PDB:

e4o2dA1	A:2-106	OB-fold	Nucleic acid-binding proteins	Nucleic acid-binding proteins
e4o2dA4	A:107-287,A:413-583	Class II aaRS and biotin synthetases	Class II aaRS and biotin synthetases	Class II aaRS and biotin synthetases
e4o2dA5	A:288-412	Prokaryotic AspRS, insert domain	Prokaryotic AspRS, insert domain	Prokaryotic AspRS, insert domain
e4o2dB1	B:2-106	OB-fold	Nucleic acid-binding proteins	Nucleic acid-binding proteins
e4o2dB2	B:107-287,B:413-583	Class II aaRS and biotin synthetases	Class II aaRS and biotin synthetases	Class II aaRS and biotin synthetases
e4o2dB3	B:288-339,B:383-412	Prokaryotic AspRS, insert domain	Prokaryotic AspRS, insert domain	Prokaryotic AspRS, insert domain

Structural contacts of domain e4o2dB2 of H-group "Class II aaRS and biotin synthetases":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain ID	Symmetry operator	H-group	Visualization
e4o2dA4	B:x,y,z->A:X,Y,Z	Class II aaRS and biotin synthetases	Interaction Interface Pymol
e4o2dA1	B:x,y,z->A:X,Y,Z	Nucleic acid-binding proteins	Interaction Interface Pymol
e4o2dA1	B:x,y,z->A:-X+5/2,-Y,Z-1/2	Nucleic acid-binding proteins	Interaction Interface Pymol
e4o2dA5	B:x,y,z->A:-X+2,Y-1/2,-Z+1/2	Prokaryotic AspRS, insert domain	Interaction Interface Pymol