| UID: | 001511593 |
|---|---|
| Type: | Automatic domain |
| Parent: | e4bbqA2 |
| Range: | A:658-723 |
| Ligands: | UNX ZN |
| PDB: | 4o64 |
| PDB Description: | Lysine-specific demethylase 2B |
| UniProt: | Q8NHM5 |
| Hsap BLAST neighbor: | Q8NHM5 |
| Species: | Homo sapiens |
Structure of domain e4o64A2
Domains in the same chain:
| e4o64A1 | A:608-657 | CXXC domain-like | CXXC domain | CXXC domain |
| e4o64A2 | A:658-723 | RING/U-box-like | RING/U-box-like | FYVE/PHD zinc finger |
Domains in the same PDB:
| e4o64A1 | A:608-657 | CXXC domain-like | CXXC domain | CXXC domain |
| e4o64A2 | A:658-723 | RING/U-box-like | RING/U-box-like | FYVE/PHD zinc finger |
| e4o64B2 | B:608-656 | CXXC domain-like | CXXC domain | CXXC domain |
| e4o64B1 | B:657-723 | RING/U-box-like | RING/U-box-like | FYVE/PHD zinc finger |
| e4o64C2 | C:608-656 | CXXC domain-like | CXXC domain | CXXC domain |
| e4o64C1 | C:657-723 | RING/U-box-like | RING/U-box-like | FYVE/PHD zinc finger |
Structural contacts of domain e4o64A2 of H-group "RING/U-box-like":
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The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.
| Domain ID | Symmetry operator | H-group | Visualization |
|---|---|---|---|
| e4o64A1 | A:x,y,z->A:-Y+2,X-Y,Z+1/3 | CXXC domain | Interaction Interface Pymol |
| e4o64A2 | A:x,y,z->A:-Y+2,X-Y,Z+1/3 | RING/U-box-like | Interaction Interface Pymol |
| e4o64A2 | A:-Y+2,X-Y,Z+1/3->A:x,y,z | RING/U-box-like | Interaction Interface Pymol |
| e4o64A1 | A:x,y,z->A:-Y+2,X-Y,Z-2/3 | CXXC domain | Interaction Interface Pymol |
| e4o64B2 | A:x,y,z->B:-Y+2,X-Y,Z-2/3 | CXXC domain | Interaction Interface Pymol |
