ECOD: domain e4omfA1

Domain ID e4omfA1

A: alpha complex topology
X: alpha-helical domain in nickel-iron hydrogenase, large subunit
H: alpha-helical domain in nickel-iron hydrogenase, large subunit
T: alpha-helical domain in nickel-iron hydrogenase, large subunit
F: Unmapped domains

UID:	001814148
Type:	Automatic domain
Parent:	e1ublL3
Range:	A:85-319
Ligands:	CL MG SF4
PDB:	4omf
PDB Description:	F420-reducing hydrogenase, subunit alpha
UniProt:	D9PYF9
Species:

Domains in the same chain:

Download Pymol

e4omfA2	A:2-88,A:320-386	FAD-linked reductases, C-terminal domain-like	Ni-Fe binding domain in nickel-iron hydrogenase large subunit	Ni-Fe binding domain in nickel-iron hydrogenase large subunit
e4omfA1	A:85-319	alpha-helical domain in nickel-iron hydrogenase, large subunit	alpha-helical domain in nickel-iron hydrogenase, large subunit	alpha-helical domain in nickel-iron hydrogenase, large subunit

Domains in the same PDB:

e4omfA2	A:2-88,A:320-386	FAD-linked reductases, C-terminal domain-like	Ni-Fe binding domain in nickel-iron hydrogenase large subunit	Ni-Fe binding domain in nickel-iron hydrogenase large subunit
e4omfA1	A:85-319	alpha-helical domain in nickel-iron hydrogenase, large subunit	alpha-helical domain in nickel-iron hydrogenase, large subunit	alpha-helical domain in nickel-iron hydrogenase, large subunit
e4omfB1	B:2-281	F420-reducing hydrogenase subunit beta	F420-reducing hydrogenase subunit beta	F420-reducing hydrogenase subunit beta
e4omfG1	G:45-210	Flavodoxin-like	Class I glutamine amidotransferase-like	CheY-like
e4omfG2	G:211-275	4Fe-4S ferredoxin	4Fe-4S ferredoxin	4Fe-4S ferredoxin

Structural contacts of domain e4omfA1 of H-group "alpha-helical domain in nickel-iron hydrogenase, large subunit":

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The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain ID	Symmetry operator	H-group	Visualization
e4omfA1	A:x,y,z->A:Z,-X+1/2,-Y+1/2	alpha-helical domain in nickel-iron hydrogenase, large subunit	Interaction Interface Pymol
e4omfA1	A:Z,-X+1/2,-Y+1/2->A:x,y,z	alpha-helical domain in nickel-iron hydrogenase, large subunit	Interaction Interface Pymol
e4omfB1	A:X,Y,Z->B:x,y,z	F420-reducing hydrogenase subunit beta	Interaction Interface Pymol
e4omfB1	A:Z,X,Y->B:x,y,z	F420-reducing hydrogenase subunit beta	Interaction Interface Pymol
e4omfB1	A:X,-Y+1/2,-Z+1/2->B:x,y,z	F420-reducing hydrogenase subunit beta	Interaction Interface Pymol
e4omfA1	A:x,y,z->A:X,-Y+1/2,-Z+1/2	alpha-helical domain in nickel-iron hydrogenase, large subunit	Interaction Interface Pymol
e4omfA1	A:X,-Y+1/2,-Z+1/2->A:x,y,z	alpha-helical domain in nickel-iron hydrogenase, large subunit	Interaction Interface Pymol
e4omfA2	A:-Z,X+1/2,-Y+1/2->A:x,y,z	Ni-Fe binding domain in nickel-iron hydrogenase large subunit	Interaction Interface Pymol