Domain ID e4oo1A2

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  • A: a+b two layers
  • X: Ribosomal protein S5 domain 2-like
  • H: Ribosomal protein S5 domain 2-like
  • T: Ribosomal protein S5 domain 2-like
  • F: RNase_PH
UID: 001299760
Type: Automatic domain
Parent: e2nn6A2
Range: A:3-186
Ligands: MES
PDB: 4oo1
PDB Description: Exosome complex component RRP45
UniProt: Q05636
Hsap BLAST neighbor: Q06265
Species:

Structure of domain e4oo1A2

Domains in the same chain:

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e4oo1A2 A:3-186 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e4oo1A1 A:187-301 Ribonuclease PH domain 2-like Ribonuclease PH domain 2 Ribonuclease PH domain 2

Domains in the same PDB:

e4oo1A2 A:3-186 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e4oo1A1 A:187-301 Ribonuclease PH domain 2-like Ribonuclease PH domain 2 Ribonuclease PH domain 2
e4oo1B1 B:4-152 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e4oo1B2 B:153-242 Ribonuclease PH domain 2-like Ribonuclease PH domain 2 Ribonuclease PH domain 2
e4oo1C1 C:6-101,C:121-249,C:271-286 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e4oo1C2 C:287-394 Ribonuclease PH domain 2-like Ribonuclease PH domain 2 Ribonuclease PH domain 2
e4oo1D1 D:1-125 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e4oo1D2 D:126-221 Ribonuclease PH domain 2-like Ribonuclease PH domain 2 Ribonuclease PH domain 2
e4oo1E1 E:2-180 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e4oo1E2 E:181-264 Ribonuclease PH domain 2-like Ribonuclease PH domain 2 Ribonuclease PH domain 2
e4oo1F1 F:5-20,F:43-185 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e4oo1F2 F:183-248 Ribonuclease PH domain 2-like Ribonuclease PH domain 2 Ribonuclease PH domain 2
e4oo1G1 G:2-63 alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid Ribosomal L27 protein
e4oo1G3 G:62-151 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e4oo1G2 G:152-235 Alpha-lytic protease prodomain-like KH-domains Eukaryotic type KH-domain (KH-domain type I)
e4oo1H3 H:5-14,H:50-101 alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid Ribosomal L27 protein
e4oo1H1 H:102-196 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e4oo1H2 H:196-247,H:277-357 Alpha-lytic protease prodomain-like KH-domains Eukaryotic type KH-domain (KH-domain type I)
e4oo1I2 I:5-68,I:106-115 alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid Ribosomal L27 protein
e4oo1I1 I:128-162,I:186-291 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e4oo1J1 J:128-420 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e4oo1J2 J:421-516 HhH/H2TH SAM/DNA-glycosylase SAM domain-like

Structural contacts of domain e4oo1A2 of H-group "Ribosomal protein S5 domain 2-like":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e4oo1B1 A:X,Y,Z->B:x,y,z Ribosomal protein S5 domain 2-like Interaction Interface Pymol
e4oo1B2 A:X,Y,Z->B:x,y,z Ribonuclease PH domain 2 Interaction Interface Pymol
e4oo1D1 A:X,Y,Z->D:x,y,z Ribosomal protein S5 domain 2-like Interaction Interface Pymol
e4oo1G3 A:X,Y,Z->G:x,y,z Nucleic acid-binding proteins Interaction Interface Pymol
e4oo1G2 A:X,Y,Z->G:x,y,z KH-domains Interaction Interface Pymol
e4oo1A2 A:x,y,z->A:-X+2,-Y+1,Z Ribosomal protein S5 domain 2-like Interaction Interface Pymol
e4oo1A2 A:-X+2,-Y+1,Z->A:x,y,z Ribosomal protein S5 domain 2-like Interaction Interface Pymol
e4oo1C1 A:X,Y,Z->C:x,y,z Ribosomal protein S5 domain 2-like Interaction Interface Pymol
e4oo1F1 A:X,Y,Z->F:x,y,z Ribosomal protein S5 domain 2-like Interaction Interface Pymol